Julian Stirling
39a04df5be
Objects for scan locations allowing more sophisitcated tracking.
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This commit updates the scan planners to allow more sophisticated
tracking of past positions. Currently it still checks that
the algorithm is unchanged from past behaviour.
2025-10-19 19:55:36 +01:00
Julian Stirling
96ffbb2b49
Bump version for alpha3 and update changelog
2025-10-09 19:55:42 +01:00
jaknapper
b58ddbf7d9
Update testing
2025-10-09 17:51:15 +01:00
Julian Stirling
94541b2d4f
Merge branch 'stack-height-sanitise' into 'v3'
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Verify stack params at start of scan main loop
Closes #455
See merge request openflexure/openflexure-microscope-server!400
2025-10-09 14:00:59 +00:00
Joe Knapper
089beae01a
Tests for coercing stack params to valid values.
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Co-authored with Julian Stirling
2025-10-09 14:26:01 +01:00
Joe Knapper
dae5b816cc
Merge branch 'sample-size-sim' into 'v3'
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Simulate a rectangular sample
Closes #516
See merge request openflexure/openflexure-microscope-server!401
2025-10-07 10:09:37 +00:00
Joe Knapper
2fc92fc1ff
Test sample and canvas size
2025-10-02 13:56:08 +01:00
Joe Knapper
bfe0064ce8
Update dummy test and fix sample coords
2025-09-25 16:14:13 +01:00
Julian Stirling
91c4fb22db
Remove checks that purge empty scans is run in run_scan as it has moved
2025-09-25 15:16:23 +01:00
Joe Knapper
0e5517d45c
Fix another hardcoded linux test
2025-09-25 12:04:39 +01:00
Julian Stirling
b9ca8b3094
Apply suggestions from code review of branch Increased-linting
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Co-authored-by: Beth Probert <beth_probert@outlook.com>
2025-09-19 10:16:47 +00:00
Julian Stirling
6b1e40f689
Add flake8-simplicity rules
2025-09-18 16:21:45 +01:00
Julian Stirling
d7d1f42b2c
Enable PyTest ruff checks
2025-09-18 16:21:45 +01:00
Julian Stirling
9c20c18230
Remove mock for loading tuning file during test as it no longer needs to talk to hardware.
2025-09-18 13:00:46 +01:00
Julian Stirling
24233412af
Start adding ANN ruff rules
2025-08-27 18:54:15 +01:00
Julian Stirling
2325dced5e
Merge branch 'test-server-startup' into 'v3'
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Test server startup
See merge request openflexure/openflexure-microscope-server!379
2025-08-27 16:11:34 +00:00
Julian Stirling
4af4e89c0a
Merge branch 'no-uvicorn.error-logs-without-error' into 'v3'
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Stop reporting uvicorn.error in log file unless log it is an error
Closes #511
See merge request openflexure/openflexure-microscope-server!375
2025-08-27 14:30:11 +00:00
Julian Stirling
5515d55e6d
Merge branch 'error-types' into 'v3'
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Tweak a few error types.
Closes #320
See merge request openflexure/openflexure-microscope-server!376
2025-08-27 13:47:26 +00:00
Julian Stirling
353d311c1e
Apply suggestions from code review of branch no-uvicorn.error-logs-without-error
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Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
2025-08-27 13:24:37 +00:00
Julian Stirling
2d89cdd3a3
Add tests for the legacy api
2025-08-24 20:45:55 +01:00
Julian Stirling
e53f4e3b2b
Remove the conftest defined fixtures as mock methods return mocks already removing the need for the defined mocks
2025-08-24 19:22:19 +01:00
Julian Stirling
867cd0cad1
Add further server setup tests splitting up configuration testing from CLI
2025-08-24 19:11:03 +01:00
Julian Stirling
405299b221
Test server configuration helper functions
2025-08-22 23:11:27 +01:00
Julian Stirling
d5e2a48f32
Fix tests to catch correct error types
2025-08-21 16:21:09 +01:00
Julian Stirling
3529c96ec6
Stop reporting uvicorn.error in log file unless log it is an error
2025-08-21 15:40:27 +01:00
Julian Stirling
6fa4e4dc64
Add a grab_as_array camera method that grabs from the stream but catches broken jpegs and retries
2025-08-21 13:35:21 +01:00
Julian Stirling
347247f45b
Add unit tests that simulates broken frames and catches the correct error.
2025-08-21 13:35:21 +01:00
Julian Stirling
3289221c6b
Add unit tests for all of serving static files. Update docs in src to clarify behaviour
2025-08-15 11:01:43 +01:00
Julian Stirling
db41d673fb
Add tests for static directory checking
2025-08-15 09:21:38 +01:00
Julian Stirling
bfdbbb9ad2
Merge branch 'request-no-cache' into 'v3'
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Request no cache
See merge request openflexure/openflexure-microscope-server!361
2025-08-14 19:59:58 +00:00
Julian Stirling
67ebb94d6c
Add tests for not caching static files except fonts
2025-08-14 14:46:23 +01:00
Julian Stirling
af93db7de8
Merge branch 'let-preview-stitch-cancel' into 'v3'
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Allow preview to cancel!
See merge request openflexure/openflexure-microscope-server!359
2025-08-13 15:18:13 +00:00
Julian Stirling
c066843f9b
Test cancelling preview
2025-08-12 16:42:15 +01:00
Julian Stirling
59224fe726
Remove unneded eumerates
2025-08-12 15:15:02 +01:00
Julian Stirling
6142a267db
Add flake8 bugbear checks
2025-08-12 13:09:43 +01:00
Julian Stirling
058f890c61
Update version numbers for v3 alpha2 release
2025-08-08 11:58:14 +01:00
Julian Stirling
3d7438ed2b
Merge branch 'stitch-tile-size' into 'v3'
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Update to stitching 0.2
See merge request openflexure/openflexure-microscope-server!352
2025-08-08 10:29:43 +00:00
jaknapper
f9f28b3500
Update tests
2025-08-08 10:44:03 +01:00
Julian Stirling
3a4b99df55
Apply suggestions from code review of branch faster-stage-tests
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Co-authored-by: Beth Probert <beth_probert@outlook.com>
2025-08-08 09:32:31 +00:00
Julian Stirling
90dbb35a9e
Directly call DummyStage instance during movement test for speed
2025-08-08 09:52:23 +01:00
Julian Stirling
dbdf254154
Fix CLI arg for FinalStitcher, and a docstring typo.
2025-08-07 15:20:14 +01:00
Julian Stirling
5caae613dc
Apply suggestions from code review of branch yet-another-smart-scan-refactor
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Co-authored-by: Beth Probert <beth_probert@outlook.com>
2025-08-07 13:55:47 +00:00
Julian Stirling
cd311f08bf
Update stiching to differentiate bwtween stitchers that use a thread and those that block
2025-08-06 17:47:33 +01:00
Julian Stirling
f9fcdf628b
Squash final todos for SmartScan refactor
2025-08-06 17:27:26 +01:00
Julian Stirling
4e9b07c78f
Consolidate information into ScanData, remove ad-hoc differences for specific error in _run_scan
2025-08-06 17:27:26 +01:00
Julian Stirling
82691a6b78
Tweak error reporting in _run_scan and add a lot more testing for _run_scan
2025-08-06 17:27:26 +01:00
Julian Stirling
d7a7ac4c7d
More complete testing of code that runs stitching subprocess.
2025-08-06 17:27:26 +01:00
Julian Stirling
cf74ea1351
More complete testing of code that runs stitching subprocess.
2025-08-06 17:27:26 +01:00
Julian Stirling
7569c7d6b2
Add validation checks to prevent arbitrary code execution via stitching.
2025-08-06 17:27:26 +01:00
Julian Stirling
a632ddee92
Add unit tests for generated stitching commands.
2025-08-06 17:27:26 +01:00
