Richard Bowman
333b52aa9b
background detect and better focus handling
...
The primary change here is that there's now an option
to skip autofocus if the background detect plugin says
the current image is background.
I have also overhauled the way it picks the next Z position
based on Joe's code; instead of just using the last point, it will
pick the closest point where we have a successful autofocus
recorded. This will usually be the last point, except for raster
scans where it neatly reproduces the behaviour of the old code
but without needing to treat it as a special case (when we jump
back to the start of a line, it will use the z position of the start
of the previous line, rather than the end of the previous line).
This does represent a minor change to previous behaviour, but
it should not break anything that isn't already broken, i.e. it might
cause slightly odd behaviour if autofocus gives random results -
but probably indistinguishable from the current behaviour.
2022-04-06 23:15:25 +01:00
Richard
72f3c11fdd
linting and typing fixes
2021-07-19 20:29:13 +01:00
Richard
f2a4b976b9
Fix whitespace
2021-05-13 10:43:50 +01:00
Richard Bowman
792e782968
Validate scan shape on the server
...
The scan API view now uses a schema with validation
constraints to enforce a minimum size of 1 in any dimension.
This requires better error handling in the app, which I've added.
It also needs a fix in LabThings so the error propagates correctly
2021-02-09 09:21:56 +00:00
Joel Collins
18a0eedd5e
Fixed tile method reference
2020-11-30 16:57:54 +00:00
Joel Collins
8d0759e9e0
Updated default extensions to subclass structure
2020-11-30 16:41:39 +00:00
Joel Collins
7866ec0f47
Static type analysis
2020-11-30 13:36:45 +00:00
Joel Collins
b2192b2190
Fixed unused imports
2020-11-25 15:32:08 +00:00
Joel Collins
5137d1b9dc
Added basic unit tests of non-integrated functions
2020-11-25 15:25:17 +00:00
Joel Collins
3451b8a8a5
Added full TileScanArgs schema
2020-11-12 16:56:28 +00:00
Joel Collins
6fb61e1e3f
Reverted logging style
2020-11-12 15:45:58 +00:00
Joel Collins
9f5252194a
Updated all log strings to new format
2020-11-12 15:12:17 +00:00
Joel Collins
601e51d9b9
Code formatting
2020-10-26 14:58:09 +00:00
Joel Collins
ef4e825b9c
Merge branch 'temporary' into 'master'
...
Added a spiral scan option
See merge request openflexure/openflexure-microscope-server!75
2020-10-26 14:54:23 +00:00
Joel Collins
1677f0df76
Blackened
2020-10-19 18:34:58 +01:00
Joel Collins
4ae39db402
Revert scan to use old fast autofocus
2020-10-19 18:20:40 +01:00
Joel Collins
994e83dbeb
Code cleanup
2020-10-14 14:56:29 +00:00
Joe Knapper
ad8fd54cb7
Added a spiral scan option
2020-10-14 15:52:44 +01:00
Joel Collins
2bfb988460
Code formatting
2020-10-13 15:02:19 +01:00
Joel Collins
1c0cc32b6c
Close #166
2020-09-30 13:25:36 +01:00
Joel Collins
e110045dd3
Increased default_stop_timeout on TileScanAPI
2020-07-22 16:11:26 +01:00
Joel Collins
24398ba7dc
Updated tasks nomenclature
2020-07-21 12:54:42 +01:00
Joel Collins
54c5605cb1
Removed use of deprecated current_task_stopped
2020-07-21 11:57:33 +01:00
Joel Collins
4bf866b66b
Added fancy-stopping to scan task
2020-07-15 16:54:34 +01:00
Joel Collins
ab3c4b3745
Merge remote-tracking branch 'origin/master' into labthings-070
2020-07-03 18:13:20 +01:00
Joel Collins
6c0017be5a
Added metadata cache key
2020-07-01 15:35:31 +01:00
Joel Collins
e6cb9f6b35
Initial 0.7.0 conversion
2020-06-29 15:24:59 +01:00
Joel Collins
9cecb477cb
Flipped to explicit finite lock timeouts
2020-06-29 09:03:27 +01:00
Joel Collins
efdffa51e9
Added scan timing log
2020-06-11 16:58:14 +01:00
Joel Collins
677b08d509
Restructured scan extension
2020-05-22 11:20:12 +01:00
Joel Collins
eaf4cf09f5
Updated to new Action tasks
2020-05-12 11:29:53 +01:00
Joel Collins
28e555ad9b
Added explicit endpoints
2020-05-10 16:35:16 +01:00
Joel Collins
45ee112e6f
Fixed broken references
2020-04-28 14:40:09 +01:00
Joel Collins
caf553db7a
Moved capture management into separate object
2020-04-28 14:32:56 +01:00
Joel Collins
9646058c37
Code format
2020-04-28 13:20:38 +01:00
Joel Collins
37dc7b055c
Fixed missing microscope parameter for autofocus
2020-03-30 17:04:09 +01:00
Joel Collins
10fa93d11c
Iterated to 2.0.0
2020-03-24 10:22:49 +00:00
Joel Collins
a4f6bc7dbe
Fixed scanning fast autofocus
2020-02-17 11:44:26 +00:00
Joel Collins
65fc58c651
Fixed scan to use newer fast autofocus
2020-01-30 14:22:03 +00:00
Joel Collins
7458d278d8
Simplified new configuration and metadata
2020-01-29 15:36:57 +00:00
jtc42
6df7fe9405
Blackened
2020-01-24 15:41:33 +00:00
jtc42
36334ed743
Moved to a LabThings dependency for server
2020-01-17 15:13:32 +00:00
Joel Collins
a329b9197b
Renamed Resource to View, and allow custom root links
2020-01-14 11:41:56 +00:00
Joel Collins
4003e4e65c
Renamed devices to components
2020-01-13 11:08:05 +00:00
Joel Collins
f0f2a30d7e
Added versions and full names to default extensions
2020-01-11 21:17:08 +00:00
Joel Collins
a4196b6765
Refactored adding views, actions, props and components
2020-01-11 14:58:50 +00:00
Joel Collins
8a282db12b
Moved to collision-robust device name
2020-01-09 20:04:22 +00:00
jtc42
8afb0757bd
Better handle response documentation
2020-01-06 22:28:00 +00:00
jtc42
1ccdad8a86
Removed some unused imports
2020-01-06 17:55:43 +00:00
jtc42
8b472eab1b
Use @use_args
2020-01-06 17:48:16 +00:00
