Joe Knapper
04b7d0d4fa
Merge branch 'v3-default-factory-for-dictionaries' into 'v3'
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Use a default_factory for dict default values
Closes #750 and #751
See merge request openflexure/openflexure-microscope-server!561
2026-05-13 08:03:52 +00:00
Joe Knapper
31210be9ac
Merge branch 'objective-sim' into 'v3'
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Scale blur in simulator based on objective
Closes #745
See merge request openflexure/openflexure-microscope-server!567
2026-05-13 08:02:44 +00:00
Richard Bowman
cb9270c9e8
Use a default_factory for dict default values
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`backlash_steps` and `axis_inverted` were `lt.setting`s with default values that were dictionaries. This means they had mutable default values, which caused crosstalk in the test suite.
This commit swaps them to default factory functions. This should isolate instances from each other and stop the offending behaviour.
2026-05-13 08:26:52 +01:00
jaknapper
ec83556da7
Convert server prefix to str for Mock tests
2026-05-12 15:42:50 +01:00
jaknapper
645a6dd136
Update endpoints for logs
2026-05-12 14:23:33 +01:00
Julian Stirling
92619e2131
Merge branch 'calibration_thing' into 'v3'
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Calibrate settling times after moves
See merge request openflexure/openflexure-microscope-server!207
2026-05-11 12:32:30 +00:00
jaknapper
c171e5bdde
Remove hold from sharpness monitor
2026-05-11 12:49:20 +01:00
jaknapper
ffa023dfa9
Correct data types in sharpness monitors
2026-05-11 11:04:55 +00:00
jaknapper
500e08555c
Measure settling time action and hold in sharpness monitor
2026-05-11 11:04:55 +00:00
Julian Stirling
b6efb73cba
Fix data directory save location and mount path
2026-05-11 11:07:38 +01:00
Joe Knapper
906b8be82c
Merge branch 'start-gallery-thing' into 'v3'
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Start implementing GalleryThing
See merge request openflexure/openflexure-microscope-server!576
2026-05-07 09:51:47 +00:00
Julian Stirling
c7bb3e3c11
Improve some attribute/method names
2026-05-07 09:48:49 +01:00
Julian Stirling
aeb337f9d1
Merge branch 'choose_int_downsample' into 'v3'
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Choose a correlation resize factor rounded to an int
See merge request openflexure/openflexure-microscope-server!541
2026-05-07 08:14:41 +00:00
Julian Stirling
a16d47ed61
ScanList gets scans from GalleryThing, no ongoing scans shown.
2026-05-06 16:01:09 +01:00
Julian Stirling
4583151345
Add runtime checkable protocol for checking gallery compatibility.
2026-05-06 14:42:44 +01:00
Julian Stirling
93d7d75b0d
Create basic gallery class that finds Things that want to show data
2026-05-06 10:05:34 +01:00
Julian Stirling
cc681a666c
Change shutdown command depending on OS versions
2026-04-30 14:48:35 +01:00
Julian Stirling
5b14f8d820
Add method for checking OS version.
2026-04-30 14:14:24 +01:00
Richard Bowman
9334e99551
Fix typing of JPEGSharpnessMonitor attributes
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appends should be done on the underlying `_`-prefixed attributes, not on the `Sequence` typed properties.
2026-04-28 14:58:55 +01:00
Richard Bowman
d2aebf8b10
Make properties of JPEGSharpnessMonitor read-only
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For thread-safety reasons we should not modify the lists used by
`JPEGSharpnessMonitor`. This commit marks them as read-only properties
and types them as `Sequence` so `mypy` should flag if they get modified.
2026-04-28 14:50:04 +01:00
Joe Knapper
924676ff5d
Merge branch 'stack-trends' into 'v3'
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Stack trends
Closes #752
See merge request openflexure/openflexure-microscope-server!564
2026-04-16 12:20:01 +00:00
Joe Knapper
4da8172a16
Updates from review, mark tests as allowed to fail
2026-04-16 11:49:04 +01:00
Joe Knapper
271c45b873
Scale blur in simulator based on objective
2026-04-09 16:16:59 +01:00
jaknapper
bc6ea9a1ca
Manually test for increasing or decreasing stacks
2026-04-02 17:43:52 +01:00
Beth Probert
7106ce1302
Set debug default value to False
2026-04-02 15:09:55 +01:00
Beth Probert
01954167ab
Merge branch 'v3' into labthings-debug-logging-config
2026-04-02 10:50:06 +01:00
jaknapper
1bb2a125bc
Update comment
2026-03-27 11:28:58 +00:00
jaknapper
96d67672d9
Choose a correlation resize factor rounded to an int
2026-03-27 11:28:58 +00:00
Joe Knapper
74476f18a0
Merge branch 'smart_stack_as_mixin' into 'v3'
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Move smart stacking into a mixin so it can be re-used in other workflows
See merge request openflexure/openflexure-microscope-server!554
2026-03-25 13:45:09 +00:00
Julian Stirling
17feec33e2
Apply suggestions from code review of branch smart_stack_as_mixin
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Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
2026-03-25 12:26:32 +00:00
Julian Stirling
b7be12e183
Fix c-chip workflow and stop forcing the scan workflow mixin to be a workflow
2026-03-25 09:45:38 +00:00
Julian Stirling
b8db7ae2a1
Don't define both stacks for CChips
2026-03-24 16:21:18 +00:00
Julian Stirling
a82fcca339
Move smart stacking into a mixin so it can be re-used in other workflows
2026-03-24 15:58:04 +00:00
Joe Knapper
5283c1a3c5
Extra normpath in Thing startup
2026-03-24 12:40:19 +00:00
Joe Knapper
1d11e7044e
Move from posix path to os path
2026-03-23 16:59:57 +00:00
Joe Knapper
91075af70e
Apply suggestions from code review of branch sigkill-handling
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Co-authored-by: Beth Probert <beth_probert@outlook.com>
2026-03-18 14:51:32 +00:00
Joe Knapper
0618263830
Switch to ignoring line
2026-03-18 14:12:27 +00:00
Joe Knapper
1f43d1cc53
Explicit windows check before sigkill for mypy
2026-03-18 12:40:55 +00:00
Joe Knapper
19f422b2cf
Merge branch 'exposure-test' into 'v3'
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Flush more frames and use a request when doing exposure time
Closes #639
See merge request openflexure/openflexure-microscope-server!540
2026-03-17 14:30:24 +00:00
jaknapper
0bc6e45df9
Picamera test
2026-03-16 16:33:07 +00:00
jaknapper
a11d46777f
Only drop frames when setting min exposure time
2026-03-16 15:01:10 +00:00
Joe Knapper
3b84c266b4
Apply suggestions from code review of branch exposure-test
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Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
2026-03-16 14:31:21 +00:00
jaknapper
ae04f3b133
Drop frame drop to 2
2026-03-13 13:22:56 +00:00
jaknapper
a4aac53072
Flush more frames and use a request when doing exposure time
2026-03-13 10:48:22 +00:00
Joe Knapper
68c9f76fc0
Fix missing import
2026-03-12 16:11:41 +00:00
Joe Knapper
5ce77538d1
Fix tests now we dont do extra backlash moves
2026-03-12 14:53:55 +00:00
jaknapper
b43150c8bb
Remove backlash correction from basic stack, as this is handled by move rel
2026-03-12 14:53:55 +00:00
Joe Knapper
ffb9a4d509
Add CChip workflow to scan_workflows
2026-03-12 14:53:55 +00:00
Julian Stirling
36111f4da3
Merge branch 'stream-rder' into 'v3'
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Handle scan settings, then change stream, then pre-scan procedure when scanning
See merge request openflexure/openflexure-microscope-server!442
2026-03-11 11:52:03 +00:00
Joe Knapper
2e1066477e
Add parser.path to html sanitiser, fixing tests
2026-03-11 10:24:40 +00:00
