Joe Knapper
|
69db7b4041
|
Apply 2 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
|
2025-06-05 17:09:37 +00:00 |
|
Joe Knapper
|
41f6c8879a
|
RATIO as a global, better naming and splitting of generate_image()
|
2025-06-05 15:03:26 +01:00 |
|
Joe Knapper
|
2db895a1fc
|
Defocus and realign simulation axes
|
2025-06-05 12:09:01 +01:00 |
|
Julian Stirling
|
16317bf94c
|
Merge branch 'fix-simulation' into 'v3'
Simulation fixes
See merge request openflexure/openflexure-microscope-server!279
|
2025-06-05 10:35:53 +00:00 |
|
Joe Knapper
|
c919f8a19f
|
Logging config based on default uvicorn settings
|
2025-06-03 14:48:13 +01:00 |
|
Julian Stirling
|
4ef74c42c3
|
Configure log folder in json file
|
2025-06-03 14:05:58 +01:00 |
|
jaknapper
|
a499d9230c
|
Switch to updated "preview stitch" mode in stitching
|
2025-05-23 16:28:22 +01:00 |
|
jaknapper
|
cc3620d2ed
|
Stitch with dzi by default, and check for dzi available in scans()
|
2025-05-23 16:28:21 +01:00 |
|
jaknapper
|
efe2127afb
|
Mount scans to app on startup
|
2025-05-23 16:28:21 +01:00 |
|
Julian Stirling
|
fe1696df28
|
Fix error in purge_empty_scans if the images dir hadn't been created
|
2025-05-23 12:49:46 +01:00 |
|
Julian Stirling
|
70f4304b2e
|
Fix bug where .jpg files are not counted in scan list (only .jpeg)
|
2025-05-23 11:45:26 +01:00 |
|
jaknapper
|
b812c6be35
|
Settling time as global, settle before taking first image in stack
|
2025-05-21 15:41:49 +01:00 |
|
Julian Stirling
|
6332c8b647
|
Merge branch 'openflexure-stitching-from-pip' into 'v3'
Import openflexure-stitching from pip
See merge request openflexure/openflexure-microscope-server!270
|
2025-05-21 10:00:48 +00:00 |
|
jaknapper
|
44f2435ea4
|
Removed stitching path as kwarg for scanning
|
2025-05-21 10:30:42 +01:00 |
|
Julian Stirling
|
c793620fcd
|
Merge branch 'cleanup_empty_scans' into 'v3'
Added purge_empty_scans() method
Closes #370
See merge request openflexure/openflexure-microscope-server!257
|
2025-05-20 18:26:00 +00:00 |
|
Joe Knapper
|
6c8c8bf358
|
Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
|
2025-05-20 17:04:48 +00:00 |
|
jaknapper
|
4a44dceac6
|
More clear variable name, use _delete_scan to avoid calling fastapi-endpoint in loops
|
2025-05-20 16:36:57 +01:00 |
|
Joe Knapper
|
a563c634a3
|
Update serve static files to serve correct directory and to add docstrings
|
2025-05-15 16:30:37 +00:00 |
|
jaknapper
|
d4b3508b77
|
Clean up of serve_static_files
|
2025-05-15 14:10:15 +01:00 |
|
jaknapper
|
19d72bef1c
|
Error handling in _delete_scan(), which is now handled in GUI main.js
|
2025-05-14 16:11:02 +01:00 |
|
Joe Knapper
|
1468a90c60
|
Merge branch 'scan_tab' into 'v3'
Scan tab updates
See merge request openflexure/openflexure-microscope-server!260
|
2025-05-14 11:53:19 +00:00 |
|
jaknapper
|
99e52bcb2f
|
Formatting and fixing wrong variable in loop
|
2025-05-14 12:23:01 +01:00 |
|
Joe Knapper
|
251b0ca770
|
Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
|
2025-05-14 10:26:37 +00:00 |
|
jaknapper
|
3eea4bbaf6
|
Log each line individually to ensure line breaks
|
2025-05-13 17:08:09 +01:00 |
|
jaknapper
|
69260d1973
|
stitch available property, allowing GUI to only stitch when needed
|
2025-05-13 15:51:11 +01:00 |
|
jaknapper
|
a77c0f6f9d
|
Updated wrong path to file
|
2025-05-13 15:28:16 +01:00 |
|
Joe Knapper
|
b5893bc29c
|
Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
|
2025-05-13 12:34:50 +00:00 |
|
jaknapper
|
56edddd195
|
Data filename as global
|
2025-05-13 13:03:34 +01:00 |
|
jaknapper
|
1952e05284
|
Scan result in data json
|
2025-05-13 13:00:04 +01:00 |
|
jaknapper
|
9734bba23b
|
Inputs renamed to data where appropriate
|
2025-05-13 12:45:55 +01:00 |
|
jaknapper
|
0e3c71b958
|
Removed from finally block
|
2025-05-13 12:39:04 +01:00 |
|
jaknapper
|
3a45c68ef3
|
Try Except around deleting scans to check for PermissionErrors
|
2025-05-13 12:23:01 +01:00 |
|
jaknapper
|
845c21c68a
|
Move update data outside of finally block
|
2025-05-13 11:46:56 +01:00 |
|
jaknapper
|
272f050905
|
Move update data outside of finally block
|
2025-05-13 11:32:03 +01:00 |
|
jaknapper
|
4234c92fed
|
Better formatting of duration as datetime timedelta without microseconds
|
2025-05-13 11:10:27 +01:00 |
|
jaknapper
|
3c93a56c74
|
Updated json at end
|
2025-05-12 18:53:05 +01:00 |
|
jaknapper
|
0df363a1be
|
Run purge_empty_scans() at the end of each scan
|
2025-05-09 12:12:12 +01:00 |
|
jaknapper
|
2a23982330
|
Added purge_empty_scans() method
|
2025-05-08 19:44:05 +01:00 |
|
Joe Knapper
|
ecfa0aa479
|
Merge branch 'scan_coments' into 'v3'
New comments on scanning
Closes #329
See merge request openflexure/openflexure-microscope-server!256
|
2025-05-08 17:59:14 +00:00 |
|
Joe Knapper
|
cb71f32b95
|
Apply 1 suggestion(s) to 1 file(s)
|
2025-05-08 17:44:42 +00:00 |
|
Joe Knapper
|
973988219f
|
Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
|
2025-05-08 17:43:49 +00:00 |
|
jaknapper
|
7e507be4a1
|
Ruff formatting
|
2025-05-08 18:42:10 +01:00 |
|
jaknapper
|
0e34ab8793
|
New comments on scanning
|
2025-05-08 18:41:32 +01:00 |
|
Joe Knapper
|
444c056f93
|
Apply 1 suggestion(s) to 1 file(s)
|
2025-05-08 17:30:26 +00:00 |
|
jaknapper
|
d2ab448732
|
New comments on scanning
|
2025-05-08 18:22:40 +01:00 |
|
jaknapper
|
46865b342d
|
Remove testing focus success, use scan data autofocus dz
|
2025-05-08 17:32:38 +01:00 |
|
jaknapper
|
bdb307ca18
|
Remove verify_autofocus from autofocus
|
2025-05-08 17:32:04 +01:00 |
|
jaknapper
|
736b82d071
|
Remove logger from zipping
|
2025-05-07 20:35:26 +01:00 |
|
Joe Knapper
|
6f8e91afe7
|
Apply 1 suggestion(s) to 1 file(s)
|
2025-05-07 20:22:40 +01:00 |
|
jaknapper
|
b31a5e44fb
|
Rename banned names to delayed
|
2025-05-07 20:22:40 +01:00 |
|