rahix/openflexure-microscope-server
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions
3357 commits 1 branch 0 tags 24 MiB
Commit graph

91 commits

Author SHA1 Message Date
Joe Knapper
c00c027ab1 Apply suggestions from code review of branch img-name 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2025-07-31 14:52:21 +00:00
jaknapper
df918bf286 Prepend images with img_ 2025-07-31 13:53:57 +01:00
Julian Stirling
f91582c9eb Apply suggestions from code review of branch better-docstrings 
Co-authored-by: Richard Bowman <richard.bowman@cantab.net>
 2025-07-10 23:31:34 +00:00
Julian Stirling
7e6017f648 Get codespell passing and add it as a CI job. 2025-07-11 00:16:25 +01:00
Julian Stirling
e33fecaef0 Documentation of python magic class methods 2025-07-10 16:46:10 +01:00
Julian Stirling
1bbbfeef0f Add docstrings to public methods 2025-07-10 14:04:48 +01:00
Julian Stirling
a30b726b91 Class docstrings 2025-07-10 13:27:41 +01:00
Julian Stirling
11a1fd7f85 Move ThingSetting and ThingProperty docstrings under the definition. 2025-07-10 10:43:05 +01:00
Julian Stirling
80beeea07b Add punctuation to docstrings 2025-07-10 09:24:50 +01:00
Julian Stirling
4dc41bb008 Single line summaries of docstrings 2025-07-10 09:24:49 +01:00
Julian Stirling
35d47fe3ed Starting docstring on the same lines as the quotations 2025-07-10 09:24:49 +01:00
Julian Stirling
a84a916719 Restructured text fixes so that pydoctor would return without an error 2025-07-09 23:59:08 +01:00
Julian Stirling
52a80ef66b And adjust for new as lt import 2025-07-07 15:25:14 +01:00
Julian Stirling
840ed7f20e Update Thing Settings to use the new format provided by PR #110 of Labthings FastAPI 2025-07-07 15:24:30 +01:00
Julian Stirling
8002600fcf Apply suggestions from code review of branch fast-stack 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2025-06-27 16:40:18 +00:00
Julian Stirling
9a92fd478a Final docstring and testing updates based on code review 2025-06-27 16:54:28 +01:00
Julian Stirling
46f3d21632 Apply suggestions from code review of branch fast-stack 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-06-27 11:52:53 +01:00
Julian Stirling
fc6c13f40e Apply suggestions from code review of branch fast-stack 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-06-27 10:41:53 +00:00
Julian Stirling
73e54b802b Stop smart stack infinietly looping 2025-06-27 01:29:26 +01:00
Julian Stirling
2ce2f998fa add tests for helper classes defined by fast stack 2025-06-27 00:34:51 +01:00
Julian Stirling
2aea6a2569 Docstrings and stop using Pydantic for ScanParameters 2025-06-26 19:46:25 +01:00
Julian Stirling
43d5f2fdfe Change capture_resolution to save resolution, because it is used for saving not capture 2025-06-26 19:00:52 +01:00
Julian Stirling
6a87805b47 Fixing a number of issues from the merge and refactor. 2025-06-26 18:29:12 +01:00
Julian Stirling
61dd5e4958 Compete first (untested) pass of trying to make fast stack compatible with new memory captures 2025-06-26 17:43:11 +01:00
Julian Stirling
fda0a6e1ab Merge branch 'v3' into fast-stack, with conflict resolution but not fully 
working yet
 2025-06-26 11:50:24 +01:00
Joe Knapper
378998d230 Merge branch 'jpeg-capture-in-stacking' into 'v3' 
2MP from 8MP capturing

Closes #364, #413, #298, #303, #288, #358, and #433

See merge request openflexure/openflexure-microscope-server!251
 2025-06-25 17:57:51 +00:00
Julian Stirling
0933ece63a Apply suggestions from code review of branch jpeg-capture-in-stacking 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-06-25 15:39:36 +01:00
Julian Stirling
be07966631 Remove the overwriting of internal globals, requires removing future annoations 2025-06-24 10:18:30 +01:00
jaknapper
11c8f47e20 Rename central image to sharpest 2025-06-23 18:13:46 +01:00
jaknapper
7c3a9ad01f Copy sharpest image from stack, not the most average sharpness! 2025-06-23 18:08:27 +01:00
jaknapper
8ba40832e0 Neighbour cutoff moved from autofocus.py to scan_planners.py 2025-06-23 14:13:08 +01:00
jaknapper
2a0de9122b computed_field pydantic decorators 2025-06-23 14:04:30 +01:00
jaknapper
ee128ad91f Rename to StackParams, move undershoots into Params 2025-06-23 13:47:14 +01:00
jaknapper
7cff0f8f44 StackInfo dataclass 2025-06-23 12:56:31 +01:00
Julian Stirling
72faba0272 Fix issues found by linter in PiCamera Code 
Issue #423 created based on lens shading TODOs
 2025-06-23 12:39:25 +01:00
jaknapper
333ea1b644 More input validation and comments 2025-06-23 12:02:00 +01:00
Joe Knapper
7a7547542c Apply suggestions from code review of branch fast-stack 
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
 2025-06-23 10:36:26 +00:00
Julian Stirling
0e3f4305b5 Tidy post refactor of cameras 2025-06-23 11:26:24 +01:00
Julian Stirling
4368dc3d90 Consolidate functionality into BaseCamera from Capture Thing and StreamingPicamera2 2025-06-23 11:26:22 +01:00
jaknapper
628fd145f3 Cleaned up settling time maths to only calculate once 2025-06-23 11:25:49 +01:00
jaknapper
2f9e37a02f More descriptive timing variable names 2025-06-23 11:25:49 +01:00
jaknapper
985d20e032 Capture resolution as a Thing property 2025-06-23 11:25:49 +01:00
jaknapper
968bd339c2 SETTLING_TIME global in stacking 2025-06-23 11:25:37 +01:00
jaknapper
52b58241cc Added copy_sharpest_image to autofocus 2025-06-23 11:19:23 +01:00
jaknapper
0d32983b62 Only undershoot z stack if image count > 1, settle before first capture 2025-06-23 11:19:23 +01:00
jaknapper
744ec28f93 Get images as a PIL image from camera, use resizing and saving as settling time in stack 2025-06-23 11:19:20 +01:00
jaknapper
9f2a131f1e Swap stream for scan, target_resolution as arg 2025-06-23 11:17:46 +01:00
jaknapper
f5c1ff2621 Ruff formating 2025-06-23 11:17:46 +01:00
jaknapper
de7ffb9d1e Stream_name and capture_method args updated 2025-06-23 11:17:46 +01:00
jaknapper
8bc0573ab1 Capture_array can now use "full" stream 2025-06-23 11:17:46 +01:00