rahix/openflexure-microscope-server
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574 commits

Author SHA1 Message Date
jaknapper
1b14990b76 Stop overwriting CCM in full recalibrate 
Fix typo
 2025-11-11 11:20:06 +00:00
jaknapper
ac08462405 Attempt to load custom tuning file first 
Most likely want to be in try except
 2025-11-11 11:20:06 +00:00
jaknapper
e3a7252d78 Example custom tuning files 
imx219 has been tested briefly

imx477 untested, based on imx219 with custom ccm
 2025-11-11 11:20:06 +00:00
jaknapper
b47413100e README walking through the settings in the tuning file, and initial thoughts 2025-11-11 11:20:06 +00:00
Julian Stirling
ff70e44858 Don't read json data of ongoing scans 2025-11-04 18:50:17 +00:00
Julian Stirling
46e9070a33 Rename ScanListData to ScanListInfo as it containts ScanInfo not ScanData objects 2025-11-04 18:50:17 +00:00
Julian Stirling
7d583dcf94 Apply suggestions from code review of branch dont-mutate-tuning-files 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
 2025-10-29 13:08:10 +00:00
Julian Stirling
ee2ef848b1 Add native implementation of find_tuning_algo 2025-10-29 13:08:10 +00:00
Julian Stirling
815b112069 Update the picamera tuning file utilities to not modify the dictionaries in place 2025-10-29 13:08:10 +00:00
Julian Stirling
2bc315f85d Update picamera cal docstring now white balance isn't its own method. 2025-10-28 14:00:02 +00:00
jaknapper
ba3f7f6cf5 Remove unused code, add comments 2025-10-28 14:00:01 +00:00
jaknapper
506693f653 Set colour gains directly from Lens Shading Table 2025-10-28 13:58:53 +00:00
Julian Stirling
551e392e91 Merge branch 'pil-simulation' into 'v3' 
Improve simulation frame rate

See merge request openflexure/openflexure-microscope-server!419
 2025-10-27 14:29:55 +00:00
Julian Stirling
418a6b5364 Merge branch 'calibration-wizard-refactor' into 'v3' 
Refactor Calibration Wizard

Closes #578

See merge request openflexure/openflexure-microscope-server!415
 2025-10-27 14:15:05 +00:00
Julian Stirling
d27948a155 Reduce time jitter in simulation. 2025-10-27 13:37:53 +00:00
Julian Stirling
c8a028e27c And file coms in PIL 2025-10-27 13:37:53 +00:00
Julian Stirling
b8bdb430b7 Do blur in PIL 2025-10-27 13:37:53 +00:00
Julian Stirling
94c9a0e7dd Merge branch 'rom_test_only' into 'v3' 
Adding automatic range of motion measurements

See merge request openflexure/openflexure-microscope-server!335
 2025-10-27 12:18:31 +00:00
Julian Stirling
08046ff657 Clarify behaviour of overloads, and better error checking of _move_and_measure inputs 2025-10-24 17:27:43 +01:00
Julian Stirling
ba8a4ca744 Apply suggestions from code review of branch rom_test_only 
Co-authored-by: Beth Probert <beth_probert@outlook.com>
 2025-10-24 14:05:07 +00:00
Julian Stirling
5860b9be97 Add CSM steps to new calibration wizard. 2025-10-23 17:32:58 +01:00
Julian Stirling
0ebc507eff Add camera calibration steps into refactored calibration wizard. 2025-10-23 17:32:58 +01:00
Julian Stirling
c0a8d15628 Add calibration_required property to Camera and CSM things. 2025-10-23 17:32:58 +01:00
jaknapper
602040426b Add timezone to capture metadata 2025-10-23 10:41:30 +01:00
Joe Knapper
24be993478 Apply suggestions from code review of branch camera-metadata 2025-10-23 10:40:56 +01:00
Joe Knapper
9db2cb9545 Apply suggestions from code review of branch camera-metadata 2025-10-23 10:40:56 +01:00
Joe Knapper
4f0d4536ab Apply suggestions from code review of branch camera-metadata 2025-10-23 10:40:56 +01:00
jaknapper
c2d8160ff4 Smart Scan metadata containing scan name if scan is running 2025-10-23 10:40:56 +01:00
jaknapper
057376a799 Capture metadata with more info, including default time tags 2025-10-23 10:40:53 +01:00
jaknapper
f8ee71b9c0 Make thing state mutable within the method 2025-10-23 10:38:10 +01:00
jaknapper
e0ce40607b Fix property name and call 2025-10-23 10:38:10 +01:00
Joe Knapper
b1413ca66c Camera metadata with basic data 2025-10-23 10:38:10 +01:00
Julian Stirling
82f435256b Release lock at end of ROM test 2025-10-22 09:57:01 +01:00
jaknapper
ab0e00eb1d Fix ruff 2025-10-21 15:30:47 +01:00
jaknapper
d913db92af CCM for HQ cam also 2025-10-21 15:14:42 +01:00
Julian Stirling
b8eb1907c3 Modify range of motion _move_back_until_motion_detected to move in SMALL_STEP steps 
This will carry on until at least 1.5x BIG_STEP in total motion. If
no motion is detected then something is up.
 2025-10-21 14:40:18 +01:00
jaknapper
18ad404a57 Set colour correction to interpolate value 
Update hardware test readme

Add pause between calibrating camera and setting background
 2025-10-21 13:37:50 +01:00
Julian Stirling
bffd7f9d0b Improve type consistency and error message 2025-10-21 10:48:53 +01:00
Julian Stirling
7f657ae853 No error on parasitic motion after small step checking for stage movement, use background detect 2025-10-20 23:02:08 +01:00
Julian Stirling
72c35c302c Adjust CSM Thing to allow calculation of stage coords from img coords and use this in stage measure 
Using this stops the z-axis being flipped when the off diagonal elements of the CSM are different
signs.
 2025-10-20 22:20:19 +01:00
Julian Stirling
635375a012 Fix assumption that CSM was a numpy array not a list 2025-10-20 16:40:41 +01:00
Julian Stirling
b314ced4f7 Final Range of motion tests 2025-10-17 17:31:34 +01:00
Julian Stirling
a935105e56 Update docstrings in response to review. 2025-10-17 15:26:39 +01:00
Julian Stirling
30217a4c38 Add tests for initial moves at start of ROM test 2025-10-17 15:19:06 +01:00
Julian Stirling
95f5bbb16c Ensure ROM z-predict returns an integer and add more tests. 2025-10-17 15:19:06 +01:00
Julian Stirling
3d49cbf921 Adding even more ROM tests 2025-10-17 15:19:06 +01:00
Julian Stirling
664c7de5f8 Add more ROM tests 2025-10-17 15:19:06 +01:00
Julian Stirling
50d6298c06 Start updating ROM tests for new structure 2025-10-17 15:19:06 +01:00
Julian Stirling
8a1acbea28 Refactor as class methods, renaming methods based on intended purpose. 
This was a very big commit as starting the refactor broke everything
 2025-10-17 15:19:06 +01:00
Julian Stirling
f1730ff2c0 Tidy up ROM action and add a lock 2025-10-17 15:19:06 +01:00