jaknapper
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17f3bbe646
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Low res stream during scanning for instant high res captures
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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a9fdd0ea3e
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Wait params in captures, multiple attempts to capture
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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de7ffb9d1e
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Stream_name and capture_method args updated
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2025-06-23 11:17:46 +01:00 |
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jaknapper
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132efa8033
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Options for capture method, default downsampling of correlations
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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ab33de7ccd
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Capture a jpeg to disk
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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d8878e40da
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Stacking in autofocus with temp capture Thing
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2025-06-23 11:17:45 +01:00 |
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jaknapper
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603b9c7d16
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Functional z stack Thing
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2025-06-23 11:17:45 +01:00 |
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Julian Stirling
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b45f5651ab
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Add scan directory to json config
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2025-06-06 12:21:51 +01:00 |
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jaknapper
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a499d9230c
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Switch to updated "preview stitch" mode in stitching
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2025-05-23 16:28:22 +01:00 |
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jaknapper
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cc3620d2ed
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Stitch with dzi by default, and check for dzi available in scans()
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2025-05-23 16:28:21 +01:00 |
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Julian Stirling
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fe1696df28
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Fix error in purge_empty_scans if the images dir hadn't been created
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2025-05-23 12:49:46 +01:00 |
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Julian Stirling
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70f4304b2e
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Fix bug where .jpg files are not counted in scan list (only .jpeg)
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2025-05-23 11:45:26 +01:00 |
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Julian Stirling
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6332c8b647
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Merge branch 'openflexure-stitching-from-pip' into 'v3'
Import openflexure-stitching from pip
See merge request openflexure/openflexure-microscope-server!270
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2025-05-21 10:00:48 +00:00 |
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jaknapper
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44f2435ea4
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Removed stitching path as kwarg for scanning
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2025-05-21 10:30:42 +01:00 |
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Julian Stirling
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c793620fcd
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Merge branch 'cleanup_empty_scans' into 'v3'
Added purge_empty_scans() method
Closes #370
See merge request openflexure/openflexure-microscope-server!257
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2025-05-20 18:26:00 +00:00 |
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Joe Knapper
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6c8c8bf358
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Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-05-20 17:04:48 +00:00 |
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jaknapper
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4a44dceac6
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More clear variable name, use _delete_scan to avoid calling fastapi-endpoint in loops
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2025-05-20 16:36:57 +01:00 |
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jaknapper
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19d72bef1c
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Error handling in _delete_scan(), which is now handled in GUI main.js
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2025-05-14 16:11:02 +01:00 |
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Joe Knapper
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1468a90c60
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Merge branch 'scan_tab' into 'v3'
Scan tab updates
See merge request openflexure/openflexure-microscope-server!260
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2025-05-14 11:53:19 +00:00 |
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jaknapper
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99e52bcb2f
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Formatting and fixing wrong variable in loop
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2025-05-14 12:23:01 +01:00 |
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Joe Knapper
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251b0ca770
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Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
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2025-05-14 10:26:37 +00:00 |
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jaknapper
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3eea4bbaf6
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Log each line individually to ensure line breaks
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2025-05-13 17:08:09 +01:00 |
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jaknapper
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69260d1973
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stitch available property, allowing GUI to only stitch when needed
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2025-05-13 15:51:11 +01:00 |
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jaknapper
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a77c0f6f9d
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Updated wrong path to file
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2025-05-13 15:28:16 +01:00 |
|
Joe Knapper
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b5893bc29c
|
Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
|
2025-05-13 12:34:50 +00:00 |
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jaknapper
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56edddd195
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Data filename as global
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2025-05-13 13:03:34 +01:00 |
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jaknapper
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1952e05284
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Scan result in data json
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2025-05-13 13:00:04 +01:00 |
|
jaknapper
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9734bba23b
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Inputs renamed to data where appropriate
|
2025-05-13 12:45:55 +01:00 |
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jaknapper
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0e3c71b958
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Removed from finally block
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2025-05-13 12:39:04 +01:00 |
|
jaknapper
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3a45c68ef3
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Try Except around deleting scans to check for PermissionErrors
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2025-05-13 12:23:01 +01:00 |
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jaknapper
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845c21c68a
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Move update data outside of finally block
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2025-05-13 11:46:56 +01:00 |
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jaknapper
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272f050905
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Move update data outside of finally block
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2025-05-13 11:32:03 +01:00 |
|
jaknapper
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4234c92fed
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Better formatting of duration as datetime timedelta without microseconds
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2025-05-13 11:10:27 +01:00 |
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jaknapper
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3c93a56c74
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Updated json at end
|
2025-05-12 18:53:05 +01:00 |
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jaknapper
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0df363a1be
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Run purge_empty_scans() at the end of each scan
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2025-05-09 12:12:12 +01:00 |
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jaknapper
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2a23982330
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Added purge_empty_scans() method
|
2025-05-08 19:44:05 +01:00 |
|
Joe Knapper
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ecfa0aa479
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Merge branch 'scan_coments' into 'v3'
New comments on scanning
Closes #329
See merge request openflexure/openflexure-microscope-server!256
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2025-05-08 17:59:14 +00:00 |
|
Joe Knapper
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cb71f32b95
|
Apply 1 suggestion(s) to 1 file(s)
|
2025-05-08 17:44:42 +00:00 |
|
Joe Knapper
|
973988219f
|
Apply 1 suggestion(s) to 1 file(s)
Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
|
2025-05-08 17:43:49 +00:00 |
|
jaknapper
|
7e507be4a1
|
Ruff formatting
|
2025-05-08 18:42:10 +01:00 |
|
jaknapper
|
0e34ab8793
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New comments on scanning
|
2025-05-08 18:41:32 +01:00 |
|
Joe Knapper
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444c056f93
|
Apply 1 suggestion(s) to 1 file(s)
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2025-05-08 17:30:26 +00:00 |
|
jaknapper
|
d2ab448732
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New comments on scanning
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2025-05-08 18:22:40 +01:00 |
|
jaknapper
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46865b342d
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Remove testing focus success, use scan data autofocus dz
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2025-05-08 17:32:38 +01:00 |
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jaknapper
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736b82d071
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Remove logger from zipping
|
2025-05-07 20:35:26 +01:00 |
|
Joe Knapper
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6f8e91afe7
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Apply 1 suggestion(s) to 1 file(s)
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2025-05-07 20:22:40 +01:00 |
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jaknapper
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b31a5e44fb
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Rename banned names to delayed
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2025-05-07 20:22:40 +01:00 |
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jaknapper
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a9d06f7d7e
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Remove commented out code, unused arguments and extra logging
|
2025-05-07 20:22:39 +01:00 |
|
jaknapper
|
a88349dbfe
|
Loop through all stitched images
|
2025-05-07 20:22:39 +01:00 |
|
jaknapper
|
aa656e4a01
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Split out zip functions and copying stitched image
|
2025-05-07 20:22:38 +01:00 |
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