Image intermediate locations between sample and background

2025-10-19 21:29:11 +01:00 · 2025-10-19 21:29:11 +01:00 · f781e6b674
commit f781e6b674
parent 39a04df5be
6 changed files with 90 additions and 23 deletions
--- a/tests/utilities/example_smart_spiral_core.pkl
+++ b/tests/utilities/example_smart_spiral_core.pkl
--- a/tests/utilities/example_smart_spiral_lobed.pkl
+++ b/tests/utilities/example_smart_spiral_lobed.pkl
--- a/tests/utilities/example_smart_spiral_regular.pkl
+++ b/tests/utilities/example_smart_spiral_regular.pkl
--- a/tests/utilities/scan_test_helpers.py
+++ b/tests/utilities/scan_test_helpers.py
@ -62,6 +62,7 @@ def visualise_scan(sample: FakeSample, planner: scan_planners.ScanPlanner) -> Fi
    ax.add_artist(sample.patch)
    xh, yh = zip(*planner.path_history, strict=True)
    xi, yi, _zi = zip(*planner.imaged_locations, strict=True)
+    xs, ys, _zs = zip(*planner.secondary_locations, strict=True)

    # convert history to numpy array so can calculate quiver arrows
    xh = np.array(xh)
@ -78,6 +79,7 @@ def visualise_scan(sample: FakeSample, planner: scan_planners.ScanPlanner) -> Fi
    )
    plt.plot(xh, yh, "r.")
    plt.plot(xi, yi, "g*")
+    plt.plot(xs, ys, "o", mfc="none", mec="blue")
    ax.axis("equal")
    return fig