rahix/openflexure-microscope-server
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jaknapper 2025-05-07 10:44:54 +01:00 • committed by Julian Stirling
parent 17f3bbe646
commit f5c1ff2621
4 changed files with 28 additions and 17 deletions
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16
src/openflexure_microscope_server/things/autofocus.py
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@ -294,7 +294,7 @@ class AutofocusThing(Thing):
capture: CaptureDep,
images_dir: str,
stack_dir: str,
capture_method: str = 'array'
capture_method: str = "array",
) -> None:
"""Run a z stack, saving all images to stack_dir and copying the
central image to stack_dir"""
@ -308,13 +308,13 @@ class AutofocusThing(Thing):
time.sleep(SETTLING_TIME)
jpeg_path = os.path.join(
stack_dir,
f"{capture_count}.jpeg",
)
if capture_method == "blob":
stack_dir,
f"{capture_count}.jpeg",
)
if capture_method == "blob":
capture.capture_jpeg(filename=jpeg_path, cam=cam)
elif capture_method == "hires_array" or capture_method == "array":
stream = 'main' if capture_method == "array" else "full"
stream = "main" if capture_method == "array" else "full"
capture._capture_and_save(
jpeg_path=jpeg_path,
cam=cam,
@ -323,7 +323,9 @@ class AutofocusThing(Thing):
stream_name=stream,
)
else:
raise ValueError('Capture method must be one of "array", "blob" or "hires_array"')
raise ValueError(
'Capture method must be one of "array", "blob" or "hires_array"'
)
# If the stack isn't complete yet, move
if capture_count + 1 < images_to_capture: