Rearranged main components

This commit is contained in:
Joel Collins 2020-10-27 14:52:27 +00:00
parent 250fd07e9a
commit eff03bfa2c
34 changed files with 734 additions and 938 deletions

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@ -200,13 +200,13 @@ export default {
// If task ends with an error
else if (result == "error") {
// Pass the error string back with reject
console.log("Rejecting pollTask due to error")
console.log("Rejecting pollTask due to error");
reject(new Error(response.data.output));
}
// If task ends with termination
else if (result == "cancelled") {
// Pass a generic termination error back with reject
console.log("Rejecting pollTask due to cancellation")
console.log("Rejecting pollTask due to cancellation");
reject(new Error("Task cancelled"));
} else {
// Since the task is still running, we can update the progress bar

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@ -17,7 +17,7 @@
</template>
<script>
import devTools from "./controlComponents/devTools.vue";
import devTools from "./tabContentComponents/aboutComponents/devTools.vue";
// Export main app
export default {

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@ -148,9 +148,9 @@
<script>
import axios from "axios";
import cameraCalibrationSettings from "../viewComponents/settingsComponents/cameraSettingsComponents/cameraCalibrationSettings.vue";
import CSMCalibrationSettings from "../viewComponents/settingsComponents/CSMSettingsComponents/CSMCalibrationSettings.vue";
import miniStreamDisplay from "../viewComponents/miniStreamDisplay.vue";
import cameraCalibrationSettings from "../tabContentComponents/settingsComponents/cameraSettingsComponents/cameraCalibrationSettings.vue";
import CSMCalibrationSettings from "../tabContentComponents/settingsComponents/CSMSettingsComponents/CSMCalibrationSettings.vue";
import miniStreamDisplay from "../genericComponents/miniStreamDisplay.vue";
export default {
name: "CalibrationModal",

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@ -21,8 +21,8 @@
</template>
<script>
import devTools from "../controlComponents/devTools.vue";
import statusPane from "../viewComponents/statusPane.vue";
import devTools from "./aboutComponents/devTools.vue";
import statusPane from "./aboutComponents/statusPane.vue";
export default {
name: "AboutContent",

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@ -269,10 +269,10 @@
<script>
import axios from "axios";
import tagList from "../fieldComponents/tagList";
import keyvalList from "../fieldComponents/keyvalList";
import tagList from "../../fieldComponents/tagList";
import keyvalList from "../../fieldComponents/keyvalList";
import taskSubmitter from "../genericComponents/taskSubmitter";
import taskSubmitter from "../../genericComponents/taskSubmitter";
// Export main app
export default {

View file

@ -11,8 +11,8 @@
</template>
<script>
import paneCapture from "../controlComponents/paneCapture";
import streamDisplay from "../viewComponents/streamDisplay.vue";
import paneCapture from "./captureComponents/paneCapture";
import streamDisplay from "./streamContent.vue";
export default {
name: "NavigateContent",

View file

@ -28,8 +28,8 @@
</div>
</div>
<div class="view-component uk-width-expand">
<galleryDisplay v-if="viewPanel == 'gallery'" />
<settingsDisplay v-else-if="viewPanel == 'settings'" />
<galleryContent v-if="viewPanel == 'gallery'" />
<settingsContent v-else-if="viewPanel == 'settings'" />
<streamDisplay v-else />
</div>
</div>
@ -38,9 +38,9 @@
<script>
import JsonForm from "../pluginComponents/JsonForm";
import WebComponentLoader from "../pluginComponents/WebComponentLoader";
import streamDisplay from "../viewComponents/streamDisplay.vue";
import galleryDisplay from "../viewComponents/galleryDisplay.vue";
import settingsDisplay from "../viewComponents/settingsDisplay.vue";
import streamDisplay from "./streamContent.vue";
import galleryDisplay from "../tabContentComponents/galleryContent.vue";
import settingsDisplay from "../tabContentComponents/settingsContent.vue";
export default {
name: "ExtensionContent",
@ -49,8 +49,8 @@ export default {
JsonForm,
WebComponentLoader,
streamDisplay,
galleryDisplay,
settingsDisplay
galleryContent,
settingsContent
},
props: {

View file

@ -1,19 +1,412 @@
<template>
<!-- Grid managing tab content -->
<div class="galleryDisplay uk-padding uk-padding-remove-top">
<!-- Gallery nav bar -->
<nav
class="gallery-navbar uk-navbar-container uk-navbar-transparent"
uk-navbar="mode: click"
>
<!-- Left side controls -->
<div
class="uk-navbar-left uk-padding-remove-top uk-padding-remove-bottom"
>
<ul class="uk-navbar-nav">
<li :class="[sortDescending ? 'uk-active' : '']">
<a class="uk-icon" href="#" @click="sortDescending = true">
<i class="material-icons">keyboard_arrow_down</i>
</a>
</li>
<li :class="[!sortDescending ? 'uk-active' : '']">
<a class="uk-icon" href="#" @click="sortDescending = false">
<i class="material-icons">keyboard_arrow_up</i>
</a>
</li>
<li>
<a href="#">Filter</a>
<div
:class="{
'uk-light uk-background-secondary':
$store.state.globalSettings.darkMode
}"
class="uk-navbar-dropdown"
>
<ul class="uk-nav uk-navbar-dropdown-nav">
<form class="uk-form-stacked">
<div
v-for="tag in allTags"
:key="tag"
class="uk-margin-small"
>
<label>
<input
:id="tag"
v-model="checkedTags"
:value="tag"
checked
class="uk-checkbox"
type="checkbox"
/>
{{ tag }}
</label>
</div>
</form>
</ul>
</div>
</li>
</ul>
</div>
<div class="view-component uk-height-1-1 uk-width-expand">
<galleryDisplay />
<!-- Right side buttons -->
<div class="uk-navbar-right">
<div class="uk-grid">
<div>
<button
class="uk-button uk-button-default uk-width-1-1"
type="button"
@click="updateCaptures()"
>
Refresh Captures
</button>
</div>
<div>
<ZipDownloader :capture-ids="Object.keys(filteredCaptures)" />
</div>
</div>
</div>
</nav>
<!-- Gallery -->
<div
v-if="$store.getters.ready"
class="uk-padding-remove-top"
uk-lightbox="toggle: .lightbox-link"
>
<!-- Folder heading -->
<div
v-if="galleryFolder"
class="gallery-folder-heading uk-flex uk-flex-middle"
>
<a
class="uk-icon uk-margin-remove"
href="#"
@click="galleryFolder = ''"
>
<i class="material-icons">arrow_back</i>
</a>
<div class="uk-margin-left">
<h3 class="uk-margin-remove uk-margin-left">
<b>SCAN</b>
{{ allScans[galleryFolder].metadata.image.name }}
</h3>
</div>
</div>
<!-- Gallery capture cards -->
<div class="gallery-grid">
<div v-for="item in sortedItems" :key="item.metadata.id">
<scanCard
v-if="'isScan' in item"
:captures="item.captures"
:metadata="item.metadata"
:thumbnail="item.thumbnail"
/>
<captureCard v-else :capture-state="item" />
</div>
</div>
</div>
</div>
</template>
<script>
import galleryDisplay from "../viewComponents/galleryDisplay.vue";
import axios from "axios";
import captureCard from "./galleryComponents/captureCard.vue";
import scanCard from "./galleryComponents/scanCard.vue";
import ZipDownloader from "./galleryComponents/zipDownloader";
// Export main app
export default {
name: "NavigateContent",
name: "GalleryDisplay",
components: {
galleryDisplay
captureCard,
scanCard,
ZipDownloader
},
data: function() {
return {
captures: [],
checkedTags: [],
sortDescending: true,
galleryFolder: "",
scanTag: "scan",
unwatchStoreFunction: null
};
},
computed: {
capturesUri: function() {
return `${this.$store.getters.baseUri}/api/v2/captures`;
},
allTags: function() {
// Return an array of unique tags across all captures
var tags = [];
for (var capture of this.captures) {
for (var tag of capture.metadata.image.tags) {
if (!tags.includes(tag)) {
tags.push(tag);
}
}
}
return tags.sort();
},
noScanCaptures: function() {
// List of captures that are not part of a scan
var captures = [];
for (var capture of this.captures) {
// Add to capture list if matched
if (!capture.metadata.dataset) {
captures.push(capture);
}
}
return captures;
},
allScans: function() {
// List of scans as capture-like objects
var scans = {};
for (var capture of this.captures) {
var annotations = capture.metadata.image.annotations;
var tags = capture.metadata.image.tags;
var dataset = capture.metadata.dataset;
if (dataset) {
var id = dataset["id"];
// If this scan ID hasn't been seen before
if (!(id in scans)) {
scans[id] = {};
scans[id].isScan = true;
scans[id].captures = [];
scans[id].metadata = {
image: {
name: dataset.name,
acquisitionDate: dataset.acquisitionDate,
id: dataset.id,
tags: [],
annotations: {}
},
type: dataset.type
};
}
// Add the capture object to the scan
scans[id].captures.push(capture);
// Add missing scan metadata, prioritising first capture
for (var key of Object.keys(annotations)) {
if (!(key in scans[id].metadata.image.annotations)) {
scans[id].metadata.image.annotations[key] = annotations[key];
}
}
// Append missing tags
for (var tag of tags) {
if (!scans[id].metadata.image.tags.includes(tag)) {
scans[id].metadata.image.tags.push(tag);
}
}
// Create a preview thumbnail
if (!("thumbnail" in scans[id])) {
scans[
id
].thumbnail = `${capture.links.download.href}?thumbnail=true`;
}
}
}
return scans;
},
scanList: function() {
// List of scans, obtained from this.allScans values
return Object.values(this.allScans);
},
itemList: function() {
// Get list of current items to show
// If galleryFolder (ie inside a scan folder), show scan captures
// Otherwise, show root captures and scan cards
if (this.galleryFolder) {
console.log(this.allScans[this.galleryFolder].captures);
return this.allScans[this.galleryFolder].captures;
} else {
return this.noScanCaptures.concat(this.scanList);
}
},
filteredItems: function() {
// Filter itemList by checkedTags
return this.filterCaptures(this.itemList, this.checkedTags);
},
filteredCaptures: function() {
var captures = {};
for (var item of this.filteredItems) {
// If it's a dataset
if ("captures" in item) {
for (var capture of item.captures) {
// Get the ID of each capture in the set
captures[capture.metadata.image.id] = capture;
}
} else {
// If it's a single capture, get the ID of the capture
captures[item.metadata.image.id] = item;
}
}
return captures;
},
sortedItems: function() {
// Sort filteredItems using sortCaptures function
return this.sortCaptures(this.filteredItems);
}
},
mounted() {
// Update on mount (does nothing if not connected)
this.updateCaptures();
// A global signal listener to perform a gallery refresh
this.$root.$on("globalUpdateCaptures", () => {
this.updateCaptures();
});
// A global signal listener to set the gallery folder
this.$root.$on("globalUpdateCaptureFolder", folder => {
this.galleryFolder = folder;
});
},
created: function() {
// Watch for host 'ready', then update status
this.unwatchStoreFunction = this.$store.watch(
(state, getters) => {
return getters.ready;
},
ready => {
if (ready) {
// If the connection is now ready, update capture list
this.updateCaptures();
} else {
// If the connection is now disconnected, empty capture list
this.captures = {};
}
}
);
},
beforeDestroy() {
// Remove global signal listener to perform a gallery refresh
this.$root.$off("globalUpdateCaptures");
// Remove global signal listener to set the gallery folder
this.$root.$off("globalUpdateCaptureFolder");
// Then we call that function here to unwatch
if (this.unwatchStoreFunction) {
this.unwatchStoreFunction();
this.unwatchStoreFunction = null;
}
},
methods: {
updateCaptures: function() {
if (this.$store.state.available) {
console.log("Updating capture list...");
axios
.get(this.capturesUri)
.then(response => {
this.captures = response.data;
})
.catch(error => {
this.modalError(error); // Let mixin handle error
});
} else {
console.log("Delaying capture update until connection is available");
}
},
filterCaptures: function(list, filterTags) {
// Filter a list of captures by an array of tags
var result = [];
for (var capture of list) {
// Assume exclusion
var includeCapture = false;
// Filter by selected tags
var tags = capture.metadata.image.tags;
let checker = (arr, target) => target.every(v => arr.includes(v));
// True if all tags match
includeCapture = checker(tags, filterTags);
// Add to capture list if matched
if (includeCapture == true) {
result.push(capture);
}
}
return result;
},
sortCaptures: function(list) {
// Sort a list of captures by metadata time
function compare(a, b) {
if (a.metadata.image.acquisitionDate < b.metadata.image.acquisitionDate)
return -1;
if (a.metadata.image.acquisitionDate > b.metadata.image.acquisitionDate)
return 1;
return 0;
}
if (this.sortDescending == true) {
return list.sort(compare).reverse();
} else {
return list.sort(compare);
}
}
}
};
</script>
<style lang="less" scoped>
.gallery-navbar {
border-width: 0 0 1px 0;
border-style: solid;
border-color: rgba(180, 180, 180, 0.25);
}
.gallery-navbar,
.gallery-folder-heading {
margin-bottom: 30px;
}
.gallery-grid {
display: grid;
grid-template-columns: repeat(auto-fill, 320px);
justify-content: center;
}
.gallery-grid > div {
display: inline-block;
margin-bottom: 20px;
}
/deep/ .capture-card {
width: 300px;
height: 100%; // Used to have all cards in a row match their heights
margin-left: auto;
margin-right: auto;
}
</style>

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@ -158,7 +158,7 @@
<script>
import axios from "axios";
import taskSubmitter from "../genericComponents/taskSubmitter";
import taskSubmitter from "../../genericComponents/taskSubmitter";
// Export main app
export default {

View file

@ -11,8 +11,8 @@
</template>
<script>
import paneNavigate from "../controlComponents/paneNavigate";
import streamDisplay from "../viewComponents/streamDisplay.vue";
import paneNavigate from "./navigateComponents/paneNavigate";
import streamDisplay from "./streamContent.vue";
export default {
name: "NavigateContent",

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@ -10,7 +10,7 @@
<script>
import axios from "axios";
import CSMCalibrationSettings from "./CSMSettingsComponents/CSMCalibrationSettings.vue";
import miniStreamDisplay from "../miniStreamDisplay.vue";
import miniStreamDisplay from "../../genericComponents/miniStreamDisplay.vue";
// Export main app
export default {

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@ -69,7 +69,7 @@
<script>
import axios from "axios";
import cameraCalibrationSettings from "./cameraSettingsComponents/cameraCalibrationSettings.vue";
import miniStreamDisplay from "../miniStreamDisplay.vue";
import miniStreamDisplay from "../../genericComponents/miniStreamDisplay.vue";
// Export main app
export default {

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@ -1,20 +1,224 @@
<template>
<!-- Grid managing tab content -->
<div uk-grid class="uk-height-1-1 uk-margin-remove uk-padding-remove">
<div class="settings-nav">
<ul class="uk-nav uk-nav-default">
<li class="uk-nav-header">Application settings</li>
<li>
<tabIcon
id="settings-display-icon"
tab-i-d="display"
:show-title="false"
:show-tooltip="false"
:require-connection="false"
:current-tab="currentTab"
@set-tab="setTab"
>
Display
</tabIcon>
</li>
<li>
<tabIcon
id="settings-features-icon"
tab-i-d="features"
:show-title="false"
:show-tooltip="false"
:require-connection="false"
:current-tab="currentTab"
@set-tab="setTab"
>
Features
</tabIcon>
</li>
<li class="uk-nav-header">Microscope settings</li>
<li>
<tabIcon
id="settings-camera-icon"
tab-i-d="camera"
:show-title="false"
:show-tooltip="false"
:require-connection="true"
:current-tab="currentTab"
@set-tab="setTab"
>
Camera
</tabIcon>
</li>
<li>
<tabIcon
id="settings-stage-icon"
tab-i-d="stage"
:show-title="false"
:show-tooltip="false"
:require-connection="true"
:current-tab="currentTab"
@set-tab="setTab"
>
Stage
</tabIcon>
</li>
<li>
<tabIcon
id="settings-mapping-icon"
tab-i-d="mapping"
:show-title="false"
:show-tooltip="false"
:require-connection="true"
:current-tab="currentTab"
@set-tab="setTab"
>
Camera/stage mapping
</tabIcon>
</li>
<li>
<tabIcon
id="settings-microscope-icon"
tab-i-d="microscope"
:show-title="false"
:show-tooltip="false"
:require-connection="true"
:current-tab="currentTab"
@set-tab="setTab"
>
General
</tabIcon>
</li>
</ul>
</div>
<div class="view-component uk-width-expand uk-padding-small">
<settingsDisplay />
<tabContent
tab-i-d="display"
:require-connection="false"
:current-tab="currentTab"
>
<div class="settings-pane uk-padding-small">
<appSettings />
<streamSettings />
</div>
</tabContent>
<tabContent
tab-i-d="features"
:require-connection="false"
:current-tab="currentTab"
>
<div class="settings-pane uk-padding-small">
<featuresSettings />
</div>
</tabContent>
<tabContent
tab-i-d="camera"
:require-connection="true"
:current-tab="currentTab"
>
<div class="settings-pane uk-padding-small">
<cameraSettings />
</div>
</tabContent>
<tabContent
tab-i-d="stage"
:require-connection="true"
:current-tab="currentTab"
>
<div class="settings-pane uk-padding-small">
<stageSettings />
</div>
</tabContent>
<tabContent
tab-i-d="mapping"
:require-connection="true"
:current-tab="currentTab"
>
<div class="settings-pane uk-padding-small">
<h3>Camera/stage mapping</h3>
<p>
Camera/stage mapping allows the stage to move relative to the camera
view. This enables functions like click-to-move, and more precise
tile scans.
</p>
<CSMSettings />
</div>
</tabContent>
<tabContent
tab-i-d="microscope"
:require-connection="true"
:current-tab="currentTab"
>
<div class="settings-pane uk-padding-small">
<h3>Microscope settings</h3>
<microscopeSettings />
</div>
</tabContent>
</div>
</div>
</template>
<script>
import settingsDisplay from "../viewComponents/settingsDisplay.vue";
import streamSettings from "./settingsComponents/streamSettings.vue";
import microscopeSettings from "./settingsComponents/microscopeSettings.vue";
import cameraSettings from "./settingsComponents/cameraSettings.vue";
import appSettings from "./settingsComponents/appSettings.vue";
import featuresSettings from "./settingsComponents/featuresSettings.vue";
import CSMSettings from "./settingsComponents/CSMSettings.vue";
import stageSettings from "./settingsComponents/stageSettings.vue";
// Import generic components
import tabIcon from "../genericComponents/tabIcon";
import tabContent from "../genericComponents/tabContent";
// Export main app
export default {
name: "NavigateContent",
name: "SettingsContent",
components: {
settingsDisplay
streamSettings,
cameraSettings,
stageSettings,
microscopeSettings,
CSMSettings,
appSettings,
featuresSettings,
tabIcon,
tabContent
},
data: function() {
return {
selected: "display",
currentTab: "display"
};
},
methods: {
setTab: function(event, tab) {
if (!(this.currentTab == tab)) {
this.currentTab = tab;
}
}
}
};
</script>
<style lang="less" scoped>
// Custom UIkit CSS modifications
@import "../../assets/less/theme.less";
.settings-nav {
overflow-y: auto;
overflow-x: hidden;
width: 250px;
padding: 10px;
background-color: rgba(180, 180, 180, 0.03);
border-width: 0 1px 0 0;
border-style: solid;
border-color: rgba(180, 180, 180, 0.25);
}
.settings-nav li > a {
padding-left: 6px !important;
border-radius: @button-border-radius;
}
</style>

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@ -135,7 +135,7 @@
<script>
import axios from "axios";
import taskSubmitter from "../genericComponents/taskSubmitter";
import taskSubmitter from "../../genericComponents/taskSubmitter";
export default {
components: {

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@ -11,8 +11,8 @@
</template>
<script>
import paneSlideScan from "../controlComponents/paneSlideScan";
import streamDisplay from "../viewComponents/streamDisplay.vue";
import paneSlideScan from "./slideScanComponents/paneSlideScan";
import streamDisplay from "./streamContent.vue";
export default {
name: "SlideScanContent",

View file

@ -8,7 +8,7 @@
</template>
<script>
import streamDisplay from "../viewComponents/streamDisplay.vue";
import streamDisplay from "./streamContent.vue";
export default {
name: "ViewContent",

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@ -1,168 +0,0 @@
<template>
<div
class="hostCard uk-card uk-card-default uk-padding-remove uk-width-medium"
:class="{ 'uk-card-secondary': $store.state.globalSettings.darkMode }"
>
<div class="uk-card-media-top">
<div class="snapshot-container uk-width-1-1 uk-height-auto">
<img
class="uk-width-1-1"
:data-src="snapshotSrc"
:src="snapshotSrc"
width="300"
height="225"
/>
<div
v-if="!snapshotAvailable"
class="uk-position-cover uk-flex uk-flex-center uk-flex-middle"
>
Snapshot unavailable
</div>
</div>
</div>
<div class="uk-card-body uk-padding-small">
<div
class="uk-margin-small uk-margin-remove-left uk-margin-remove-right uk-flex uk-flex-middle"
>
<div class="uk-width-expand host-description">
<div class="host-description">
<b>{{ name }}</b>
</div>
<div class="host-description">{{ hostname }}:{{ port }}</div>
</div>
<a
v-if="deletable"
href="#"
class="uk-icon uk-width-auto host-delete"
@click="$emit('delete')"
><i class="material-icons">delete</i></a
>
</div>
</div>
<div class="uk-card-footer uk-padding-small">
<button
class="uk-button uk-button-default uk-form-small uk-float-right uk-margin uk-margin-remove-top uk-width-1-1"
@click="$emit('connect')"
>
Connect
</button>
</div>
</div>
</template>
<script>
import axios from "axios";
// Export main app
export default {
name: "HostCard",
props: {
name: {
type: String,
required: true
},
hostname: {
type: String,
required: true
},
port: {
type: Number,
required: true
},
deletable: {
type: Boolean,
required: false,
default: true
}
},
data: function() {
return {
snapshotRule: "/api/v2/streams/snapshot",
snapshotSrc: "",
snapshotAvailable: false,
polling: null
};
},
computed: {
routesURL: function() {
return `http://${this.hostname}:${this.port}/routes`;
},
snapshotURL: function() {
return `http://${this.hostname}:${this.port}${this.snapshotRule}`;
}
},
mounted() {
// Try to load the microscope snapshot when mounted
this.checkSnapshotAvailable();
},
beforeDestroy() {
// Clear the polling timer
if (this.polling !== null) {
clearInterval(this.polling);
}
},
methods: {
checkSnapshotAvailable: function() {
// Fetches the list of routes from the host, and starts
// a snapshot timer if the snapshot route is available
// Send tag request
axios
.get(this.routesURL)
.then(response => {
// If the host has a snapshot route available
if (this.snapshotRule in response.data) {
// Tell the view that a snapshot is available
this.snapshotAvailable = true;
// Update the snapshot URL
this.updateSnapshotURL();
// If not already polling, start polling
if (this.polling === null) {
this.updateSnapshotPoll();
}
}
})
.catch(() => {
// Tell the view that a snapshot is not available, and ignore
this.snapshotAvailable = false;
});
},
updateSnapshotURL: function() {
// Set the snapshot image src to the snapshot URL,
// adding a timestamp argument to act as a cache-breaker
this.snapshotSrc = `${this.snapshotURL}?${Date.now()}`;
},
updateSnapshotPoll: function() {
// Start a timer to call updateSnapshotURL periodically
this.polling = setInterval(() => {
this.updateSnapshotURL();
}, 15000);
}
}
};
</script>
<style>
.host-description {
text-overflow: ellipsis;
overflow: hidden;
}
.snapshot-container {
position: relative;
}
img[data-src][src*="data:image"] {
background: rgba(127, 127, 127, 0.1);
}
</style>

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@ -1,409 +0,0 @@
<template>
<div class="galleryDisplay uk-padding uk-padding-remove-top">
<!-- Gallery nav bar -->
<nav
class="gallery-navbar uk-navbar-container uk-navbar-transparent"
uk-navbar="mode: click"
>
<!-- Left side controls -->
<div
class="uk-navbar-left uk-padding-remove-top uk-padding-remove-bottom"
>
<ul class="uk-navbar-nav">
<li :class="[sortDescending ? 'uk-active' : '']">
<a class="uk-icon" href="#" @click="sortDescending = true">
<i class="material-icons">keyboard_arrow_down</i>
</a>
</li>
<li :class="[!sortDescending ? 'uk-active' : '']">
<a class="uk-icon" href="#" @click="sortDescending = false">
<i class="material-icons">keyboard_arrow_up</i>
</a>
</li>
<li>
<a href="#">Filter</a>
<div
class="uk-navbar-dropdown"
:class="{
'uk-light uk-background-secondary':
$store.state.globalSettings.darkMode
}"
>
<ul class="uk-nav uk-navbar-dropdown-nav">
<form class="uk-form-stacked">
<div
v-for="tag in allTags"
:key="tag"
class="uk-margin-small"
>
<label>
<input
:id="tag"
v-model="checkedTags"
class="uk-checkbox"
type="checkbox"
:value="tag"
checked
/>
{{ tag }}
</label>
</div>
</form>
</ul>
</div>
</li>
</ul>
</div>
<!-- Right side buttons -->
<div class="uk-navbar-right">
<div class="uk-grid">
<div>
<button
type="button"
class="uk-button uk-button-default uk-width-1-1"
@click="updateCaptures()"
>
Refresh Captures
</button>
</div>
<div>
<ZipDownloader :capture-ids="Object.keys(filteredCaptures)" />
</div>
</div>
</div>
</nav>
<!-- Gallery -->
<div
v-if="$store.getters.ready"
class="uk-padding-remove-top"
uk-lightbox="toggle: .lightbox-link"
>
<!-- Folder heading -->
<div
v-if="galleryFolder"
class="gallery-folder-heading uk-flex uk-flex-middle"
>
<a
href="#"
class="uk-icon uk-margin-remove"
@click="galleryFolder = ''"
>
<i class="material-icons">arrow_back</i>
</a>
<div class="uk-margin-left">
<h3 class="uk-margin-remove uk-margin-left">
<b>SCAN</b>
{{ allScans[galleryFolder].metadata.image.name }}
</h3>
</div>
</div>
<!-- Gallery capture cards -->
<div class="gallery-grid">
<div v-for="item in sortedItems" :key="item.metadata.id">
<scanCard
v-if="'isScan' in item"
:metadata="item.metadata"
:thumbnail="item.thumbnail"
:captures="item.captures"
/>
<captureCard v-else :capture-state="item" />
</div>
</div>
</div>
</div>
</template>
<script>
import axios from "axios";
import captureCard from "./galleryComponents/captureCard.vue";
import scanCard from "./galleryComponents/scanCard.vue";
import ZipDownloader from "./galleryComponents/zipDownloader";
// Export main app
export default {
name: "GalleryDisplay",
components: {
captureCard,
scanCard,
ZipDownloader
},
data: function() {
return {
captures: [],
checkedTags: [],
sortDescending: true,
galleryFolder: "",
scanTag: "scan",
unwatchStoreFunction: null
};
},
computed: {
capturesUri: function() {
return `${this.$store.getters.baseUri}/api/v2/captures`;
},
allTags: function() {
// Return an array of unique tags across all captures
var tags = [];
for (var capture of this.captures) {
for (var tag of capture.metadata.image.tags) {
if (!tags.includes(tag)) {
tags.push(tag);
}
}
}
return tags.sort();
},
noScanCaptures: function() {
// List of captures that are not part of a scan
var captures = [];
for (var capture of this.captures) {
// Add to capture list if matched
if (!capture.metadata.dataset) {
captures.push(capture);
}
}
return captures;
},
allScans: function() {
// List of scans as capture-like objects
var scans = {};
for (var capture of this.captures) {
var annotations = capture.metadata.image.annotations;
var tags = capture.metadata.image.tags;
var dataset = capture.metadata.dataset;
if (dataset) {
var id = dataset["id"];
// If this scan ID hasn't been seen before
if (!(id in scans)) {
scans[id] = {};
scans[id].isScan = true;
scans[id].captures = [];
scans[id].metadata = {
image: {
name: dataset.name,
acquisitionDate: dataset.acquisitionDate,
id: dataset.id,
tags: [],
annotations: {}
},
type: dataset.type
};
}
// Add the capture object to the scan
scans[id].captures.push(capture);
// Add missing scan metadata, prioritising first capture
for (var key of Object.keys(annotations)) {
if (!(key in scans[id].metadata.image.annotations)) {
scans[id].metadata.image.annotations[key] = annotations[key];
}
}
// Append missing tags
for (var tag of tags) {
if (!scans[id].metadata.image.tags.includes(tag)) {
scans[id].metadata.image.tags.push(tag);
}
}
// Create a preview thumbnail
if (!("thumbnail" in scans[id])) {
scans[
id
].thumbnail = `${capture.links.download.href}?thumbnail=true`;
}
}
}
return scans;
},
scanList: function() {
// List of scans, obtained from this.allScans values
return Object.values(this.allScans);
},
itemList: function() {
// Get list of current items to show
// If galleryFolder (ie inside a scan folder), show scan captures
// Otherwise, show root captures and scan cards
if (this.galleryFolder) {
console.log(this.allScans[this.galleryFolder].captures);
return this.allScans[this.galleryFolder].captures;
} else {
return this.noScanCaptures.concat(this.scanList);
}
},
filteredItems: function() {
// Filter itemList by checkedTags
return this.filterCaptures(this.itemList, this.checkedTags);
},
filteredCaptures: function() {
var captures = {};
for (var item of this.filteredItems) {
// If it's a dataset
if ("captures" in item) {
for (var capture of item.captures) {
// Get the ID of each capture in the set
captures[capture.metadata.image.id] = capture;
}
} else {
// If it's a single capture, get the ID of the capture
captures[item.metadata.image.id] = item;
}
}
return captures;
},
sortedItems: function() {
// Sort filteredItems using sortCaptures function
return this.sortCaptures(this.filteredItems);
}
},
mounted() {
// Update on mount (does nothing if not connected)
this.updateCaptures();
// A global signal listener to perform a gallery refresh
this.$root.$on("globalUpdateCaptures", () => {
this.updateCaptures();
});
// A global signal listener to set the gallery folder
this.$root.$on("globalUpdateCaptureFolder", folder => {
this.galleryFolder = folder;
});
},
created: function() {
// Watch for host 'ready', then update status
this.unwatchStoreFunction = this.$store.watch(
(state, getters) => {
return getters.ready;
},
ready => {
if (ready) {
// If the connection is now ready, update capture list
this.updateCaptures();
} else {
// If the connection is now disconnected, empty capture list
this.captures = {};
}
}
);
},
beforeDestroy() {
// Remove global signal listener to perform a gallery refresh
this.$root.$off("globalUpdateCaptures");
// Remove global signal listener to set the gallery folder
this.$root.$off("globalUpdateCaptureFolder");
// Then we call that function here to unwatch
if (this.unwatchStoreFunction) {
this.unwatchStoreFunction();
this.unwatchStoreFunction = null;
}
},
methods: {
updateCaptures: function() {
if (this.$store.state.available) {
console.log("Updating capture list...");
axios
.get(this.capturesUri)
.then(response => {
this.captures = response.data;
})
.catch(error => {
this.modalError(error); // Let mixin handle error
});
} else {
console.log("Delaying capture update until connection is available");
}
},
filterCaptures: function(list, filterTags) {
// Filter a list of captures by an array of tags
var result = [];
for (var capture of list) {
// Assume exclusion
var includeCapture = false;
// Filter by selected tags
var tags = capture.metadata.image.tags;
let checker = (arr, target) => target.every(v => arr.includes(v));
// True if all tags match
includeCapture = checker(tags, filterTags);
// Add to capture list if matched
if (includeCapture == true) {
result.push(capture);
}
}
return result;
},
sortCaptures: function(list) {
// Sort a list of captures by metadata time
function compare(a, b) {
if (a.metadata.image.acquisitionDate < b.metadata.image.acquisitionDate)
return -1;
if (a.metadata.image.acquisitionDate > b.metadata.image.acquisitionDate)
return 1;
return 0;
}
if (this.sortDescending == true) {
return list.sort(compare).reverse();
} else {
return list.sort(compare);
}
}
}
};
</script>
<style scoped lang="less">
.gallery-navbar {
border-width: 0 0 1px 0;
border-style: solid;
border-color: rgba(180, 180, 180, 0.25);
}
.gallery-navbar,
.gallery-folder-heading {
margin-bottom: 30px;
}
.gallery-grid {
display: grid;
grid-template-columns: repeat(auto-fill, 320px);
justify-content: center;
}
.gallery-grid > div {
display: inline-block;
margin-bottom: 20px;
}
/deep/ .capture-card {
width: 300px;
height: 100%; // Used to have all cards in a row match their heights
margin-left: auto;
margin-right: auto;
}
</style>

View file

@ -1,224 +0,0 @@
<template>
<!-- Grid managing tab content -->
<div uk-grid class="uk-height-1-1 uk-margin-remove uk-padding-remove">
<div class="settings-nav">
<ul class="uk-nav uk-nav-default">
<li class="uk-nav-header">Application settings</li>
<li>
<tabIcon
id="settings-display-icon"
tab-i-d="display"
:show-title="false"
:show-tooltip="false"
:require-connection="false"
:current-tab="currentTab"
@set-tab="setTab"
>
Display
</tabIcon>
</li>
<li>
<tabIcon
id="settings-features-icon"
tab-i-d="features"
:show-title="false"
:show-tooltip="false"
:require-connection="false"
:current-tab="currentTab"
@set-tab="setTab"
>
Features
</tabIcon>
</li>
<li class="uk-nav-header">Microscope settings</li>
<li>
<tabIcon
id="settings-camera-icon"
tab-i-d="camera"
:show-title="false"
:show-tooltip="false"
:require-connection="true"
:current-tab="currentTab"
@set-tab="setTab"
>
Camera
</tabIcon>
</li>
<li>
<tabIcon
id="settings-stage-icon"
tab-i-d="stage"
:show-title="false"
:show-tooltip="false"
:require-connection="true"
:current-tab="currentTab"
@set-tab="setTab"
>
Stage
</tabIcon>
</li>
<li>
<tabIcon
id="settings-mapping-icon"
tab-i-d="mapping"
:show-title="false"
:show-tooltip="false"
:require-connection="true"
:current-tab="currentTab"
@set-tab="setTab"
>
Camera/stage mapping
</tabIcon>
</li>
<li>
<tabIcon
id="settings-microscope-icon"
tab-i-d="microscope"
:show-title="false"
:show-tooltip="false"
:require-connection="true"
:current-tab="currentTab"
@set-tab="setTab"
>
General
</tabIcon>
</li>
</ul>
</div>
<div class="view-component uk-width-expand uk-padding-small">
<tabContent
tab-i-d="display"
:require-connection="false"
:current-tab="currentTab"
>
<div class="settings-pane uk-padding-small">
<appSettings />
<streamSettings />
</div>
</tabContent>
<tabContent
tab-i-d="features"
:require-connection="false"
:current-tab="currentTab"
>
<div class="settings-pane uk-padding-small">
<featuresSettings />
</div>
</tabContent>
<tabContent
tab-i-d="camera"
:require-connection="true"
:current-tab="currentTab"
>
<div class="settings-pane uk-padding-small">
<cameraSettings />
</div>
</tabContent>
<tabContent
tab-i-d="stage"
:require-connection="true"
:current-tab="currentTab"
>
<div class="settings-pane uk-padding-small">
<stageSettings />
</div>
</tabContent>
<tabContent
tab-i-d="mapping"
:require-connection="true"
:current-tab="currentTab"
>
<div class="settings-pane uk-padding-small">
<h3>Camera/stage mapping</h3>
<p>
Camera/stage mapping allows the stage to move relative to the camera
view. This enables functions like click-to-move, and more precise
tile scans.
</p>
<CSMSettings />
</div>
</tabContent>
<tabContent
tab-i-d="microscope"
:require-connection="true"
:current-tab="currentTab"
>
<div class="settings-pane uk-padding-small">
<h3>Microscope settings</h3>
<microscopeSettings />
</div>
</tabContent>
</div>
</div>
</template>
<script>
import streamSettings from "./settingsComponents/streamSettings.vue";
import microscopeSettings from "./settingsComponents/microscopeSettings.vue";
import cameraSettings from "./settingsComponents/cameraSettings.vue";
import appSettings from "./settingsComponents/appSettings.vue";
import featuresSettings from "./settingsComponents/featuresSettings.vue";
import CSMSettings from "./settingsComponents/CSMSettings.vue";
import stageSettings from "./settingsComponents/stageSettings.vue";
// Import generic components
import tabIcon from "../genericComponents/tabIcon";
import tabContent from "../genericComponents/tabContent";
// Export main app
export default {
name: "SettingsDisplay",
components: {
streamSettings,
cameraSettings,
stageSettings,
microscopeSettings,
CSMSettings,
appSettings,
featuresSettings,
tabIcon,
tabContent
},
data: function() {
return {
selected: "display",
currentTab: "display"
};
},
methods: {
setTab: function(event, tab) {
if (!(this.currentTab == tab)) {
this.currentTab = tab;
}
}
}
};
</script>
<style lang="less" scoped>
// Custom UIkit CSS modifications
@import "../../assets/less/theme.less";
.settings-nav {
overflow-y: auto;
overflow-x: hidden;
width: 250px;
padding: 10px;
background-color: rgba(180, 180, 180, 0.03);
border-width: 0 1px 0 0;
border-style: solid;
border-color: rgba(180, 180, 180, 0.25);
}
.settings-nav li > a {
padding-left: 6px !important;
border-radius: @button-border-radius;
}
</style>