diff --git a/openflexure_microscope/api/default_extensions/autofocus.py b/openflexure_microscope/api/default_extensions/autofocus.py index ed6fd813..ba6f00ca 100644 --- a/openflexure_microscope/api/default_extensions/autofocus.py +++ b/openflexure_microscope/api/default_extensions/autofocus.py @@ -129,18 +129,21 @@ def monitor_sharpness(microscope: Microscope): def sharpness_sum_lap2(rgb_image: np.ndarray) -> float: """Return an image sharpness metric: sum(laplacian(image)**")""" - image_bw: float = np.mean(rgb_image, 2) - image_lap: float = ndimage.filters.laplace(image_bw) - return np.mean(image_lap.astype(float) ** 4) + image_bw = np.mean(rgb_image, 2) + image_lap = ndimage.filters.laplace(image_bw) + return float(np.mean(image_lap.astype(float) ** 4)) def sharpness_edge(image: np.ndarray) -> float: """Return a sharpness metric optimised for vertical lines""" - gray: float = np.mean(image.astype(float), 2) + gray = np.mean(image.astype(float), 2) n: int = 20 edge: np.ndarray = np.array([[-1] * n + [1] * n]) - return np.sum( - [np.sum(ndimage.filters.convolve(gray, W) ** 2) for W in [edge, edge.T]] + return float( + np.sum( + [np.sum(ndimage.filters.convolve(gray, W) ** 2) + for W in [edge, edge.T]] + ) ) diff --git a/openflexure_microscope/stage/mock.py b/openflexure_microscope/stage/mock.py index 8b67b196..4268224c 100644 --- a/openflexure_microscope/stage/mock.py +++ b/openflexure_microscope/stage/mock.py @@ -89,7 +89,7 @@ class MissingStage(BaseStage): ) displacement = move - initial_move = np.array(displacement, dtype=np.int) + initial_move = np.array(displacement, dtype=np.integer) self._position = list(np.array(self._position) + np.array(initial_move)) logging.debug(np.array(self._position) + np.array(initial_move))