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Use scan autofocus dz

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This commit is contained in:
jaknapper 2025-06-17 12:05:46 +01:00
parent cdd603d751
commit dbb65d55b5
2 changed files with 3 additions and 1 deletions
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3
src/openflexure_microscope_server/things/autofocus.py
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@ -297,6 +297,7 @@ class AutofocusThing(Thing):
capture: CaptureDep, capture: CaptureDep,
sharpness_monitor: SharpnessMonitorDep, sharpness_monitor: SharpnessMonitorDep,
images_dir: str, images_dir: str,
autofocus_dz: int,
) -> None: ) -> None:
"""Run a z stack, saving all images to stack_dir and copying the """Run a z stack, saving all images to stack_dir and copying the
central image to stack_dir""" central image to stack_dir"""
@ -360,7 +361,7 @@ class AutofocusThing(Thing):
self.looping_autofocus( self.looping_autofocus(
stage=stage, stage=stage,
sharpness_monitor=sharpness_monitor, sharpness_monitor=sharpness_monitor,
dz=2000, dz=autofocus_dz,
) )
stage.move_relative( stage.move_relative(
z=-(overshoot + BACKLASH_CORRECTION + stack_z_range / 2) z=-(overshoot + BACKLASH_CORRECTION + stack_z_range / 2)

1
src/openflexure_microscope_server/things/smart_scan.py
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@ -646,6 +646,7 @@ class SmartScanThing(Thing):
focused_height = self._autofocus.run_z_stack( focused_height = self._autofocus.run_z_stack(
images_dir=self._ongoing_scan_images_dir, images_dir=self._ongoing_scan_images_dir,
autofocus_dz = self._scan_data['autofocus_dz']
) )
current_pos_xyz = ( current_pos_xyz = (