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Ensure smart stack exits and saves on failure only if check background is false

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This commit is contained in:
Julian Stirling 2025-11-06 19:10:55 +00:00
parent d3bd921db2
commit dabb195b08
2 changed files with 40 additions and 34 deletions
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8
src/openflexure_microscope_server/things/smart_scan.py
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@ -467,13 +467,17 @@ class SmartScanThing(lt.Thing):
continue
focused, focused_height = self._autofocus.run_smart_stack(
stack_parameters=self._stack_params
stack_parameters=self._stack_params,
save_on_failure=not self._scan_data.skip_background,
)
current_pos_xyz = (new_pos_xyz[0], new_pos_xyz[1], focused_height)
# An image was captured if we are focussed or we are not skipping background.
imaged = focused or not self._scan_data.skip_background
route_planner.mark_location_visited(
current_pos_xyz, imaged=True, focused=focused
current_pos_xyz, imaged=imaged, focused=focused
)
# increment capture counter as thread has completed