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Stacking in autofocus with temp capture Thing

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jaknapper 2025-04-23 19:16:23 +01:00 • committed by Julian Stirling
parent 46458ca8a1
commit d8878e40da
3 changed files with 6 additions and 165 deletions
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src/openflexure_microscope_server/things/smart_scan.py
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@ -32,7 +32,6 @@ from openflexure_microscope_server.utilities import ErrorCapturingThread
from openflexure_microscope_server.things.autofocus import AutofocusThing
from openflexure_microscope_server.things.camera_stage_mapping import CameraStageMapper
from openflexure_microscope_server.things.background_detect import BackgroundDetectThing
from openflexure_microscope_server.things.z_stack import ZStackThing
from openflexure_microscope_server import scan_planners
CSMDep = direct_thing_client_dependency(CameraStageMapper, "/camera_stage_mapping/")
@ -140,7 +139,6 @@ class SmartScanThing(Thing):
self._background_detect: Optional[BackgroundDep] = None
self._ongoing_scan_name: Optional[str] = None
self._starting_position: Optional[Mapping[str, int]] = None
self._z_stack: Optional[ZStackDep] = None
self._capture_thread: Optional[ErrorCapturingThread] = None
self._scan_images_taken: Optional[int] = None
# TODO Scan data is a dict during refactoring, should become a dataclass
@ -157,7 +155,6 @@ class SmartScanThing(Thing):
metadata_getter: GetThingStates,
csm: CSMDep,
background_detect: BackgroundDep,
z_stack: ZStackDep,
scan_name: str = "",
):
"""Move the stage to cover an area, taking images that can be tiled together.
@ -181,7 +178,6 @@ class SmartScanThing(Thing):
self._csm = csm
self._background_detect = background_detect
self._capture_thread = None
self._z_stack = z_stack
self._scan_images_taken = 0
# Don't set self._scan_data dictionary. This is done at the start of _run_scan
@ -217,7 +213,6 @@ class SmartScanThing(Thing):
self._ongoing_scan_name = None
self._scan_images_taken = None
self._scan_data = None
self._z_stack = None
self._scan_lock.release()
def promote_stitch_files(