Add ANN002, and ANN003 rules

src/openflexure_microscope_server/server/__init__.py

@@ -2,13 +2,13 @@
 
 from __future__ import annotations
 
-from typing import Optional, Callable
+from typing import Optional, Callable, Any
 from functools import wraps
 from copy import copy
+import logging
 
 import labthings_fastapi as lt
 import uvicorn
-import logging
 from uvicorn.main import Server
 from .serve_static_files import add_static_files
 from .legacy_api import add_v2_endpoints
@@ -32,7 +32,7 @@ def set_shutdown_function(shutdown_function: Callable[[], None]):
     original_handler = Server.handle_exit
 
     @wraps(Server.handle_exit)
-    def handle_exit(*args, **kwargs):
+    def handle_exit(*args: Any, **kwargs: Any):
         shutdown_function()
         original_handler(*args, **kwargs)
 

src/openflexure_microscope_server/things/autofocus.py

@@ -252,7 +252,7 @@ class JPEGSharpnessMonitor:
         finally:
             self.running = False
 
-    def focus_rel(self, dz: int, **kwargs) -> tuple[int, int]:
+    def focus_rel(self, dz: int, block_cancellation: int = False) -> tuple[int, int]:
         """Move the stage by dz, monitoring the position over time.
 
         This performs exactly one move. Multiple calls of this method
@@ -268,7 +268,7 @@ class JPEGSharpnessMonitor:
         self.stage_positions.append(self.stage.position)
 
         # Main move
-        self.stage.move_relative(z=dz, **kwargs)
+        self.stage.move_relative(z=dz, block_cancellation=block_cancellation)
 
         # Store the end time and position
         self.stage_times.append(time.time())

src/openflexure_microscope_server/things/stage/dummy.py

@@ -2,7 +2,7 @@
 
 from __future__ import annotations
 
-from typing import Optional
+from typing import Optional, Any
 from types import TracebackType
 from collections.abc import Mapping
 import time
@@ -19,7 +19,7 @@ class DummyStage(BaseStage):
     hardware attached.
     """
 
-    def __init__(self, step_time: float = 0.001, **kwargs):
+    def __init__(self, step_time: float = 0.001, **kwargs: Any):
         """Initialise the Dummy stage, setting the step_time to adjust the speed.
 
         :param step_time: The time in seconds per "motor" step. The default of 0.001

src/openflexure_microscope_server/things/stage/sangaboard.py

@@ -5,7 +5,7 @@ import logging
 import threading
 import time
 from copy import copy
-from typing import Iterator, Literal, Optional
+from typing import Iterator, Literal, Optional, Any
 from types import TracebackType
 from contextlib import contextmanager
 from collections.abc import Mapping
@@ -25,7 +25,7 @@ class SangaboardThing(BaseStage):
     functionality is accessed by directly querying the serial interface.
     """
 
-    def __init__(self, port: str = None, **kwargs):
+    def __init__(self, port: str = None, **kwargs: Any):
         """Initialise SangaboardThing.
 
         Initialise the "Thing", but do not initialise an underlying

src/openflexure_microscope_server/utilities.py

@@ -120,7 +120,7 @@ class ErrorCapturingThread(Thread):
 
 
 def _wrap_and_catch_errors(
-    target: Callable[..., Any], error_buffer: list, *args, **kwargs
+    target: Callable[..., Any], error_buffer: list, *args: Any, **kwargs: Any
 ):
     """Run target function in a try-except block.