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Capture the full stack requested

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This commit is contained in:
jaknapper 2025-06-16 17:27:59 +01:00
parent 0671f2d1be
commit cdd603d751
1 changed files with 12 additions and 6 deletions
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18
src/openflexure_microscope_server/things/autofocus.py
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@ -368,14 +368,20 @@ class AutofocusThing(Thing):
stage.move_relative(z=BACKLASH_CORRECTION)
stage.move_relative(z=stack_dz)
# Find the range of images from the stack to capture
sharpest_index = np.argmax(sharpnesses[-images_to_test:])
stack_extent = int((images_to_capture - 1) / 2)
stack_range = range(sharpest_index - stack_extent, sharpest_index + stack_extent + 1)
logger.info(stack_range)
capture._save_capture(
jpeg_path=captures[-images_to_test:][sharpest_index][0],
image=captures[-images_to_test:][sharpest_index][1],
metadata=captures[-images_to_test:][sharpest_index][2],
logger=logger,
)
# Loop through the range, saving each capture to disk
for capture_index in stack_range:
capture._save_capture(
jpeg_path=captures[-images_to_test:][capture_index][0],
image=captures[-images_to_test:][capture_index][1],
metadata=captures[-images_to_test:][capture_index][2],
logger=logger,
)
return heights[-images_to_test:][sharpest_index]