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Stitch with dzi by default, and check for dzi available in scans()

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jaknapper 2025-05-15 18:03:07 +01:00 • committed by Julian Stirling
parent efe2127afb
commit cc3620d2ed
1 changed files with 8 additions and 0 deletions
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8
src/openflexure_microscope_server/things/smart_scan.py
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@ -77,6 +77,7 @@ class ScanInfo(BaseModel):
modified: datetime modified: datetime
number_of_images: int number_of_images: int
stitch_available: bool stitch_available: bool
dzi: Optional[str]
DOWNLOADABLE_SCAN_FILES = ( DOWNLOADABLE_SCAN_FILES = (
@ -819,6 +820,11 @@ class SmartScanThing(Thing):
] ]
number_of_images = len(scan_images) number_of_images = len(scan_images)
stitch_available = len(stitches) > 0 stitch_available = len(stitches) > 0
dzi = [i for i in folder_contents if i.endswith("dzi")]
if len(dzi) > 0:
dzi = str(dzi[0])
else:
dzi = None
else: else:
number_of_images = 0 number_of_images = 0
stitch_available = False stitch_available = False
@ -831,6 +837,7 @@ class SmartScanThing(Thing):
modified=modified, modified=modified,
number_of_images=number_of_images, number_of_images=number_of_images,
stitch_available=stitch_available, stitch_available=stitch_available,
dzi=dzi,
) )
) )
return scans return scans
@ -1096,6 +1103,7 @@ class SmartScanThing(Thing):
"--stitching_mode", "--stitching_mode",
"all", "all",
f"{tiff_arg}", f"{tiff_arg}",
"--stitch_dzi",
"--minimum_overlap", "--minimum_overlap",
f"{round(overlap * 0.9, 2)}", f"{round(overlap * 0.9, 2)}",
images_folder, images_folder,