Merge branch 'update-js-toolchain' into 'v3'

Update js toolchain

See merge request openflexure/openflexure-microscope-server!431
This commit is contained in:
Julian Stirling 2025-11-04 17:10:28 +00:00
commit c2b8706fb5
48 changed files with 6656 additions and 9629 deletions

View file

@ -161,7 +161,6 @@ build:
- .javascript_webapp
- .rules_common
script:
- export NODE_OPTIONS=--openssl-legacy-provider
# Build JS application for production
- npm run build
artifacts:

View file

@ -5,14 +5,19 @@ module.exports = {
node: true,
},
parser: "vue-eslint-parser",
parserOptions: {
parser: "babel-eslint",
parser: "@babel/eslint-parser",
requireConfigFile: false,
ecmaVersion: 2020,
sourceType: "module",
},
extends: ["plugin:vue/recommended", "eslint:recommended", "@vue/prettier"],
rules: {
"no-console": process.env.NODE_ENV === "production" ? "warn" : "off",
"no-debugger": process.env.NODE_ENV === "production" ? "warn" : "off",
},
extends: ["plugin:vue/recommended", "eslint:recommended", "@vue/prettier"],
};

View file

@ -18,12 +18,9 @@
_Note: If you are using a Windows OS, the following commands must be executed in a Powershell terminal._
* Install Node.js (and npm)
* Install dependencies with `npm install`
* Node v18 changes SSL, and so you need a legacy version for compatibility:
* On Windows: `$env:NODE_OPTIONS = "--openssl-legacy-provider"`
* On Linux/MacOS `export NODE_OPTIONS=--openssl-legacy-provider`
* Install Node.js v18 (and npm)
* Navigate into the webapp directory with `cd webapp`
* Install dependencies with `npm install`
* Build the static web app with `npm run build`
# Developing

15755
webapp/package-lock.json generated

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@ -7,34 +7,37 @@
"scripts": {
"gv": "genversion src/version.js",
"serve": "npm run gv && vue-cli-service serve --mode development",
"build": "npm run gv && vue-cli-service build --openssl-legacy-provider --mode production",
"build": "npm run gv && vue-cli-service build --mode production",
"lint": "vue-cli-service lint --no-fix --max-warnings 0",
"lint:fix": "vue-cli-service lint --fix"
},
"dependencies": {
"material-design-icons": "^3.0",
"material-symbols": "^0.14.3",
"mousetrap": "^1.6.5",
"openseadragon": "^5.0.0",
"vue-observe-visibility": "^0.4"
},
"devDependencies": {
"@vue/cli-plugin-babel": "^3.12",
"@vue/cli-plugin-eslint": "^4.5",
"@vue/cli-service": "^4.5",
"@vue/eslint-config-prettier": "^6.0",
"axios": "^0.21",
"babel-eslint": "^10.1",
"@babel/eslint-parser": "^7.28.5",
"@vue/cli-plugin-babel": "^5.0.9",
"@vue/cli-plugin-eslint": "^5.0.9",
"@vue/cli-plugin-router": "^5.0.9",
"@vue/cli-plugin-vuex": "^5.0.9",
"@vue/cli-service": "^5.0.9",
"@vue/eslint-config-prettier": "^7.1.0",
"axios": "^1.13.1",
"core-js": "^3.46.0",
"css-loader": "^3.6",
"eslint": "^6.8",
"eslint-plugin-prettier": "^3.4",
"eslint-plugin-vue": "^6.2",
"eslint": "^7.32.0",
"eslint-config-prettier": "^8.10.2",
"eslint-plugin-prettier": "^3.4.1",
"eslint-plugin-vue": "^7.20.0",
"genversion": "^3.2.0",
"less": "^3.13",
"less-loader": "^5.0",
"mdns-js": "^1.0",
"prettier": "^1.19",
"uikit": "^3.17",
"less": "^4.4.2",
"less-loader": "^11.1.4",
"material-symbols": "^0.39.1",
"prettier": "^2.8.8",
"uikit": "^3.24.2",
"vue": "^2.7",
"vue-template-compiler": "^2.7",
"vuejs-paginate": "^2.1",

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@ -27,7 +27,7 @@ import loadingContent from "./components/loadingContent.vue";
var Mousetrap = require("mousetrap");
Mousetrap.prototype.stopCallback = function(e, element) {
Mousetrap.prototype.stopCallback = function (e, element) {
// if the element has the class "mousetrap" then no need to stop
if ((" " + element.className + " ").indexOf(" mousetrap ") > -1) {
return false;
@ -56,7 +56,7 @@ export default {
loadingContent,
},
data: function() {
data: function () {
return {
appAvailable: false,
arrowKeysDown: {},
@ -67,14 +67,14 @@ export default {
},
computed: {
isSystemDark: function() {
isSystemDark: function () {
if (window.matchMedia && window.matchMedia("(prefers-color-scheme: dark)").matches) {
return true;
} else {
return false;
}
},
handleTheme: function() {
handleTheme: function () {
var isDark = false;
if (this.$store.state.appTheme == "dark") {
isDark = true;
@ -98,7 +98,7 @@ export default {
this.systemDark = true;
}
// Create a theme observer to watch for changes
this.themeObserver = mql.addListener(e => {
this.themeObserver = mql.addListener((e) => {
if (e.matches) {
this.systemDark = true;
} else {
@ -109,7 +109,7 @@ export default {
this.checkConnection();
},
created: function() {
created: function () {
window.addEventListener("beforeunload", this.handleExit);
// Scrollwheel listener
window.addEventListener("wheel", this.wheelMonitor);
@ -131,7 +131,7 @@ export default {
// Arrow keys
Mousetrap.bind(
["up", "down", "left", "right"],
event => {
(event) => {
this.arrowKeysDown[event.keyCode] = true; //Add key to array
this.navigateKeyHandler();
},
@ -139,7 +139,7 @@ export default {
);
Mousetrap.bind(
["up", "down", "left", "right"],
event => {
(event) => {
delete this.arrowKeysDown[event.keyCode]; //Remove key from array
},
"keyup",
@ -192,7 +192,7 @@ export default {
});
},
beforeDestroy: function() {
beforeDestroy: function () {
// Disconnect the theme observer
if (this.themeObserver) {
this.themeObserver.disconnect();
@ -233,12 +233,12 @@ export default {
this.$store.commit("changeWaiting", false);
}
},
handleExit: function() {
handleExit: function () {
this.$root.$emit("globalTogglePreview", false);
},
// Handle global mouse wheel events to be associated with navigation
wheelMonitor: function(event) {
wheelMonitor: function (event) {
// Only capture scroll if the event target's parent contains the "scrollTarget" class
if (
event.target.parentNode.classList.contains("scrollTarget") ||
@ -250,7 +250,7 @@ export default {
}
},
navigateKeyHandler: function() {
navigateKeyHandler: function () {
// Calculate movement array
var x_rel = 0;
var y_rel = 0;

View file

@ -22,7 +22,7 @@
>
<img
v-if="item.iconURL"
style="filter: grayscale(100%);width: 22px;margin-top: 5px;margin-bottom: 8px;"
style="filter: grayscale(100%); width: 22px; margin-top: 5px; margin-bottom: 8px"
:src="item.iconURL"
/>
<span v-if="!item.iconURL" class="material-symbols-outlined">
@ -112,7 +112,7 @@ export default {
TabIcon,
powerContent,
},
data: function() {
data: function () {
return {
currentTab: "view",
bottomTabs: [
@ -142,7 +142,7 @@ export default {
},
computed: {
tabOrder: function() {
tabOrder: function () {
var ind = [];
for (const tab of this.topTabs) {
ind.push(tab.id);
@ -153,7 +153,7 @@ export default {
return ind;
},
topTabs: function() {
topTabs: function () {
let tabs = [
{
id: "view",
@ -182,21 +182,21 @@ export default {
},
];
if (!this.$store.state.galleryEnabled) {
tabs = tabs.filter(tab => tab.id != "gallery");
tabs = tabs.filter((tab) => tab.id != "gallery");
}
return tabs;
},
allTabs() {
return [...this.topTabs, ...this.bottomTabs];
},
currentTabIndex: function() {
currentTabIndex: function () {
return this.tabOrder.indexOf(this.currentTab);
},
},
mounted() {
// A global signal listener to switch tab
this.$root.$on("globalSwitchTab", tabID => {
this.$root.$on("globalSwitchTab", (tabID) => {
this.currentTab = tabID;
});
// A global signal listener to increment tab
@ -213,22 +213,22 @@ export default {
},
methods: {
setTab: function(event, tab) {
setTab: function (event, tab) {
if (!(this.currentTab == tab)) {
this.currentTab = tab;
}
},
incrementTabBy: function(n) {
incrementTabBy: function (n) {
const newIndex =
(((this.currentTabIndex + n) % this.tabOrder.length) + this.tabOrder.length) %
this.tabOrder.length;
const newId = this.tabOrder[newIndex];
this.currentTab = newId;
},
startModals: function() {
startModals: function () {
this.$refs.calibrationWizard.show_if_needed();
},
enterApp: function() {
enterApp: function () {
// Stuff to do once connected and all init modals are finished
},
scrollToTop() {

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@ -20,14 +20,14 @@
export default {
name: "MiniStreamDisplay",
data: function() {
data: function () {
return {
isVisible: false,
};
},
computed: {
streamImgUri: function() {
streamImgUri: function () {
return `${this.$store.getters.baseUri}/camera/mjpeg_stream`;
},
},

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@ -11,12 +11,12 @@ export default {
props: {},
computed: {
tooltipOptions: function() {
tooltipOptions: function () {
var title = this.id.charAt(0).toUpperCase() + this.id.slice(1);
return `pos: right; title: ${title}; delay: 500`;
},
classObject: function() {
classObject: function () {
return {
"tabicon-active": this.currentTab == this.id,
"uk-disabled": this.requireConnection && !this.$store.getters.ready,

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@ -44,7 +44,7 @@ export default {
},
computed: {
computedTitle: function() {
computedTitle: function () {
if (this.title !== undefined) {
return this.title;
} else {
@ -55,7 +55,7 @@ export default {
}
},
tooltipOptions: function() {
tooltipOptions: function () {
if (this.showTooltip) {
return `pos: right; title: ${this.computedTitle}; delay: 500`;
} else {
@ -63,7 +63,7 @@ export default {
}
},
classObject: function() {
classObject: function () {
return {
"tabicon-active": this.currentTab == this.tabID,
"uk-disabled": this.requireConnection && !this.$store.getters.ready,

View file

@ -145,7 +145,7 @@ export default {
},
},
data: function() {
data: function () {
return {
taskUrl: null,
progress: null,
@ -245,13 +245,13 @@ export default {
}
// Check for a task that is ongoing.
// We can't handle multiple tasks ongoing, so this picks the first.
const ongoingTask = response.data.find(t => ["pending", "running"].includes(t.status));
const ongoingTask = response.data.find((t) => ["pending", "running"].includes(t.status));
if (ongoingTask) {
// There is a started task
this.taskStarted = true;
this.$emit("taskStarted");
// Find its URL
const taskUrl = ongoingTask.links.find(t => t.rel == "self").href;
const taskUrl = ongoingTask.links.find((t) => t.rel == "self").href;
try {
await this.pollOngoingTask(ongoingTask.id, taskUrl);
} catch (error) {
@ -262,7 +262,7 @@ export default {
}
},
bootstrapTask: function() {
bootstrapTask: function () {
// Starts the process of creating a new Actiont ask
if (this.requiresConfirmation) {
this.modalConfirm(this.confirmationMessage).then(
@ -309,14 +309,14 @@ export default {
}
},
onTaskEnd: function() {
onTaskEnd: function () {
// Reset taskRunning and taskId
this.taskRunning = false;
this.taskStarted = false;
this.$emit("finished");
},
startPolling: function(taskId, taskUrl) {
startPolling: function (taskId, taskUrl) {
if (this.taskRunning != true) {
// Starts polling an existing Action task
this.taskUrl = taskUrl;
@ -327,12 +327,12 @@ export default {
}
},
pollTask: function(taskId, interval) {
pollTask: function (taskId, interval) {
interval = interval * 1000 || 500;
var checkCondition = (resolve, reject) => {
// If the condition is met, we're done!
axios.get(this.taskUrl, { baseURL: this.$store.getters.baseUri }).then(response => {
axios.get(this.taskUrl, { baseURL: this.$store.getters.baseUri }).then((response) => {
var result = response.data.status;
this.taskStatus = result;
if ((result == "running") | (result == "pending")) {
@ -382,7 +382,7 @@ export default {
this.$root.$emit("modalClosed");
},
terminateTask: function() {
terminateTask: function () {
axios.delete(this.taskUrl, { baseURL: this.$store.getters.baseUri });
this.$root.$emit("modalClosed");
},

View file

@ -17,9 +17,7 @@
</div>
<!-- Paused banner outside scroll container, positioned relative to wrapper -->
<div v-if="userIsHovering" class="paused-banner">
Auto-scroll paused
</div>
<div v-if="userIsHovering" class="paused-banner">Auto-scroll paused</div>
</div>
</div>
</template>
@ -46,10 +44,10 @@ export default {
},
watch: {
log: function() {
log: function () {
this.scrollToBottom();
},
taskStatus: function() {
taskStatus: function () {
this.scrollToBottom();
},
},

View file

@ -22,12 +22,12 @@ export default {
},
computed: {
barWidthFromProgress: function() {
barWidthFromProgress: function () {
var progress = this.progress <= 100 ? this.progress : 100;
var styleString = `width: ${progress}%`;
return styleString;
},
indeterminateProgressBar: function() {
indeterminateProgressBar: function () {
if (this.taskStatus == "pending") return true;
if ((this.taskStatus == "running") & !this.progress) {
return true;

View file

@ -128,7 +128,7 @@ export default {
};
},
computed: {
internalLabels: function() {
internalLabels: function () {
if (this.dataType == "number_object") {
let labels = {};
for (const key in this.internalValue) {
@ -138,7 +138,7 @@ export default {
}
return [];
},
valueLength: function() {
valueLength: function () {
if (this.dataType == "number_array") {
if (this.internalValue == undefined) {
return 0;
@ -148,7 +148,7 @@ export default {
return 1;
}
},
dataType: function() {
dataType: function () {
let prop = this.dataSchema;
if (prop == undefined) {
return "undefined";
@ -162,7 +162,7 @@ export default {
return "number_array";
}
if (Array.isArray(prop.items)) {
if (prop.items.every(t => num_types.includes(t.type))) {
if (prop.items.every((t) => num_types.includes(t.type))) {
return "number_array";
}
}
@ -210,46 +210,46 @@ export default {
},
methods: {
resetInternalValue: function() {
resetInternalValue: function () {
// Whenever updatirng th internal value stringify and parse as a form of deepcopy.
// This ensure that the this.value prop is not mutated for when elements of arrays
// or objects are updated.
this.internalValue = JSON.parse(JSON.stringify(this.value));
},
requestUpdate: async function() {
requestUpdate: async function () {
this.$emit("requestUpdate");
},
sendValue: async function() {
sendValue: async function () {
this.$emit("sendValue", this.internalValue);
},
checkboxUpdated: function() {
checkboxUpdated: function () {
if (this.internalValue != this.$refs.checkbox.checked) {
this.internalValue = this.$refs.checkbox.checked;
this.sendValue();
}
},
focusIn: function(event) {
focusIn: function (event) {
this.valueOnEnter = event.target.value;
},
focusOut: function(event) {
focusOut: function (event) {
if (this.valueOnEnter != event.target.value) {
this.sendValue(event.target.value);
}
},
keyDown: function(event) {
keyDown: function (event) {
// Pressing enter should set the property, whether or not we think it's changed.
if (event.keyCode == 13) {
this.sendValue();
}
},
updateIsEdited: function() {
updateIsEdited: function () {
this.isEdited = this.deepStringify(this.internalValue) !== this.deepStringify(this.value);
},
animationEnd: function() {
animationEnd: function () {
this.animateUpdate = false;
this.$emit("animationShown");
},
deepStringify: function(val) {
deepStringify: function (val) {
// Create a json string where all internal numbers are also JSON strings. This is
// needed to robustly check if the value is updated because the raw value may be a
// number but anything typed in the input is a string. In the case of arrays or

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@ -54,7 +54,7 @@ export default {
},
computed: {
propertyDescription: function() {
propertyDescription: function () {
try {
return this.thingDescription(this.thingName).properties[this.propertyName];
} catch (error) {
@ -64,13 +64,13 @@ export default {
},
watch: {
propertyDescription: function() {
propertyDescription: function () {
// Ensure we read the property once the URL is known
this.readProperty();
},
},
mounted: function() {
mounted: function () {
// Read the property when we're mounted - usually this won't
// work because the URL isn't set yet. However, it's helpful if
// the app is reloaded (e.g. from a dev server).
@ -80,17 +80,17 @@ export default {
},
methods: {
readProperty: async function() {
readProperty: async function () {
let data = await this.readThingProperty(this.thingName, this.propertyName);
this.value = data;
return data;
},
writeProperty: async function(requestedValue) {
writeProperty: async function (requestedValue) {
try {
this.value = requestedValue;
await this.writeThingProperty(this.thingName, this.propertyName, requestedValue);
if (this.readBack) {
await new Promise(r => setTimeout(r, this.readBackDelay));
await new Promise((r) => setTimeout(r, this.readBackDelay));
let newVal = await this.readProperty();
if (newVal == requestedValue) {
this.animate = true;
@ -112,7 +112,7 @@ export default {
this.readProperty();
}
},
resetAnimate: function() {
resetAnimate: function () {
this.animate = false;
},
},

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@ -33,7 +33,7 @@ export default {
},
methods: {
actionResponse: function() {
actionResponse: function () {
if (this.actionData.notify_on_success) {
this.modalNotify(this.actionData.success_message);
}

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@ -21,7 +21,7 @@ export default {
components: { devTools },
data: function() {
data: function () {
return {};
},
};

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@ -30,7 +30,7 @@ export default {
components: {},
data: function() {
data: function () {
return {
isNeeded: undefined,
availableCalibrationTasks: {},
@ -91,7 +91,7 @@ export default {
return needsCalibration;
},
resetData: function() {
resetData: function () {
this.movingBackward = false;
this.taskIndex = 0;
},
@ -99,7 +99,7 @@ export default {
/**
* Create the calibration wizard task list dynamically.
*/
create_task_list: function(thingsToCal, includeWelcome = true) {
create_task_list: function (thingsToCal, includeWelcome = true) {
const tasks = [];
// Optionally include the welcome screen
@ -125,7 +125,7 @@ export default {
this.tasks = tasks;
},
show_if_needed: async function() {
show_if_needed: async function () {
// Check if the calibration modal is needed, and only show it if it is.
let thingsToCal = await this.check_things_needing_calibration();
const needed = thingsToCal.length > 0;
@ -142,7 +142,7 @@ export default {
},
// Forces modal to show on button press
force_show: function() {
force_show: function () {
const allThings = Object.keys(this.availableCalibrationTasks);
this.resetData();
@ -150,26 +150,26 @@ export default {
this.show();
},
show: function() {
show: function () {
// Show the modal element
var el = this.$refs["calibrationModalEl"];
this.showModalElement(el); // Calls the mixin
},
hide: function() {
hide: function () {
// Show the modal
var el = this.$refs["calibrationModalEl"];
this.hideModalElement(el); // Calls the mixin
},
onHide: function() {
onHide: function () {
this.$emit("onClose");
},
/*
* Move to the previous task.
*/
previousTask: function() {
previousTask: function () {
this.movingBackward = true;
if (this.taskIndex > 0) {
this.taskIndex = this.taskIndex - 1;
@ -179,7 +179,7 @@ export default {
/*
* Move to the next task or close the modal if this is the final task.
*/
nextTask: function() {
nextTask: function () {
this.movingBackward = false;
if (this.taskIndex < this.tasks.length - 1) {
this.taskIndex = this.taskIndex + 1;

View file

@ -87,7 +87,7 @@ export default {
/*
* Move to the previous step in this task, or the previous task if first step.
*/
previousStep: function() {
previousStep: function () {
if (this.stepIndex > 0) {
this.stepIndex = this.stepIndex - 1;
} else {
@ -98,7 +98,7 @@ export default {
/*
* Move to the next step in this task, or the next task if final step.
*/
nextStep: function() {
nextStep: function () {
if (this.stepIndex < this.steps.length - 1) {
this.stepIndex = this.stepIndex + 1;
return true;

View file

@ -1,9 +1,7 @@
<template>
<div>
<p>
<b>
Before starting camera calibration:
</b>
<b> Before starting camera calibration: </b>
</p>
<ul class="uk-list uk-list-bullet">
<li>Remove any samples from your microscope</li>

View file

@ -25,7 +25,7 @@ export default {
},
computed: {
cameraUri: function() {
cameraUri: function () {
return `${this.$store.getters.baseUri}/camera/`;
},
},

View file

@ -28,7 +28,7 @@ export default {
},
},
data: function() {
data: function () {
return {
steps: [{ component: camCalibrationExplanation }, { component: cameraMainCalibrationStep }],
};

View file

@ -29,7 +29,7 @@ export default {
},
},
data: function() {
data: function () {
return {
steps: [{ component: csmExplanation }, { component: focusStep }, { component: runCsmStep }],
};

View file

@ -1,12 +1,8 @@
<template>
<div>
<p>Camera-stage mapping will calibrate the stage movement using the camera.</p>
<p>
Camera-stage mapping will calibrate the stage movement using the camera.
</p>
<p>
<b>
Before starting camera-stage mapping:
</b>
<b> Before starting camera-stage mapping: </b>
</p>
<ul class="uk-list uk-list-bullet">
<li>Add a sample with dense features to the microscope.</li>

View file

@ -1,8 +1,6 @@
<template>
<stepTemplateWithStream>
<p>
Use the buttons below to bring the sample into focus.
</p>
<p>Use the buttons below to bring the sample into focus.</p>
<p>You may also adjust the z position with <b>page up</b> and <b>page down</b>.</p>
<template #below-stream>
<div class="action-button-container">

View file

@ -3,12 +3,8 @@
<p>
<b>Calibration complete</b>
</p>
<p>
You'll need to repeat these steps from the Settings tab if you swap your objective.
</p>
<p>
Click Finish to return to your microscope.
</p>
<p>You'll need to repeat these steps from the Settings tab if you swap your objective.</p>
<p>Click Finish to return to your microscope.</p>
</div>
</template>

View file

@ -52,7 +52,7 @@ export default {
},
},
data: function() {
data: function () {
return {
steps: [{ component: this.stepComponent, props: this.stepProps }],
};

View file

@ -1,9 +1,7 @@
<template>
<div>
<p>
<b>
Some important microscope calibration data is currently missing.
</b>
<b> Some important microscope calibration data is currently missing. </b>
</p>
<p>
Your microscope will still function, however some functionality will be limited, and image

View file

@ -7,9 +7,7 @@
<input v-model="reloadWhenOverridingOrigin" class="uk-input uk-checkbox" type="checkbox" />
Reload web app with new origin
</label>
<button class="uk-button uk-button-default uk-margin-small">
Apply
</button>
<button class="uk-button uk-button-default uk-margin-small">Apply</button>
</form>
</div>
</template>
@ -21,7 +19,7 @@ export default {
components: {},
data: function() {
data: function () {
return {
newOrigin: this.$store.state.overrideOrigin,
reloadWhenOverridingOrigin: true,
@ -29,7 +27,7 @@ export default {
},
methods: {
overrideAPIHost: function(event) {
overrideAPIHost: function (event) {
// Save the origin override, so that if we reload the web app, you can easily
this.$store.commit("changeOverrideOrigin", this.newOrigin);

View file

@ -50,9 +50,7 @@
<hr />
</div>
<div v-else-if="$store.state.waiting">
Loading...
</div>
<div v-else-if="$store.state.waiting">Loading...</div>
<div v-else-if="$store.state.error"><b>Error:</b> {{ $store.state.error }}</div>
<div v-else>No active connection</div>
</div>
@ -65,7 +63,7 @@ export default {
name: "StatusPane",
components: { ActionButton },
data: function() {
data: function () {
return {
version: undefined,
version_source: undefined,
@ -73,7 +71,7 @@ export default {
},
computed: {
things: function() {
things: function () {
return this.$store.getters["wot/thingDescriptions"];
},
},

View file

@ -89,18 +89,18 @@ export default {
let label = r.output[0] ? "sample" : "background";
this.modalNotify(`Current image is ${label} (${r.output[1]})`);
},
readSettings: async function() {
readSettings: async function () {
this.backgroundDetectorStatus = await this.readThingProperty(
"camera",
"background_detector_status",
);
},
writeSettings: async function(requestedValue) {
writeSettings: async function (requestedValue) {
await this.invokeAction("camera", "update_detector_settings", { data: requestedValue });
this.animate = true;
this.readSettings();
},
resetAnimate: function() {
resetAnimate: function () {
this.animate = false;
},
},

View file

@ -139,9 +139,7 @@
</div>
<div v-else class="uk-text-warning">
<p>Stage positioning is disabled since no stage is connected.</p>
<p>
Please check all data and power connections to your motor controller board.
</p>
<p>Please check all data and power connections to your motor controller board.</p>
</div>
</div>
</template>
@ -160,7 +158,7 @@ export default {
syncPropertyButton,
},
data: function() {
data: function () {
return {
setPosition: null,
isAutofocusing: 0,
@ -178,13 +176,13 @@ export default {
invert() {
return this.$store.state.navigationInvert;
},
baseUri: function() {
baseUri: function () {
return this.$store.getters.baseUri;
},
positionStatusUri: function() {
positionStatusUri: function () {
return `${this.baseUri}/stage/position`;
},
moveInImageCoordinatesUri: function() {
moveInImageCoordinatesUri: function () {
return this.thingActionUrl("camera_stage_mapping", "move_in_image_coordinates");
},
},
@ -235,7 +233,7 @@ export default {
methods: {
timeout(ms) {
return new Promise(resolve => setTimeout(resolve, ms));
return new Promise((resolve) => setTimeout(resolve, ms));
},
async move(x, y, z, absolute) {
// Move the stage, by updating the controls and starting a move task
@ -260,7 +258,7 @@ export default {
async startMoveTask() {
await this.$refs.moveButton.startTask();
},
moveInImageCoordinatesRequest: function(x, y) {
moveInImageCoordinatesRequest: function (x, y) {
// If not movement-locked
if (!this.moveLock) {
// Lock move requests
@ -281,7 +279,7 @@ export default {
.then(() => {
this.updatePosition(); // Update the position in text boxes
})
.catch(error => {
.catch((error) => {
this.modalError(error); // Let mixin handle error
})
.then(() => {
@ -294,7 +292,7 @@ export default {
this.setPosition = await this.readThingProperty("stage", "position");
},
handleCaptureResponse: async function(response) {
handleCaptureResponse: async function (response) {
// Retrieve the captured image and save it
let imageUri = response.output.href;
if (!imageUri) {

View file

@ -92,7 +92,7 @@ export default {
EndpointButton,
},
data: function() {
data: function () {
return {
maxitems: 20,
page: 1,
@ -103,11 +103,11 @@ export default {
},
computed: {
filteredLevels: function() {
filteredLevels: function () {
let cutoffIndex = this.allLevels.indexOf(this.filterLevel);
return this.allLevels.slice(cutoffIndex, -1);
},
filteredItems: function() {
filteredItems: function () {
var items = [];
for (var item of this.logs) {
// Add to capture list if matched
@ -118,17 +118,17 @@ export default {
return items;
},
logURI: function() {
logURI: function () {
return `${this.$store.getters.baseUri}/log/`;
},
logFileURI: function() {
logFileURI: function () {
return `${this.$store.getters.baseUri}/logfile/`;
},
pagedItems: function() {
pagedItems: function () {
let startIndex = (this.page - 1) * this.maxitems;
return this.filteredItems.slice(startIndex, startIndex + this.maxitems);
},
numberOfPages: function() {
numberOfPages: function () {
return Math.floor(this.filteredItems.length / this.maxitems);
},
},
@ -190,12 +190,12 @@ export default {
}
this.logs = logs.reverse(); // Display in reverse chronological order
},
formatDateTime: function(isoDateTimeString) {
formatDateTime: function (isoDateTimeString) {
isoDateTimeString = isoDateTimeString.replace(",", ".");
let date = new Date(isoDateTimeString);
return date.toLocaleDateString() + " " + date.toLocaleTimeString();
},
escapeText: function(unsafeText) {
escapeText: function (unsafeText) {
let div = document.createElement("div");
div.innerText = unsafeText;
return div.innerHTML;

View file

@ -35,14 +35,14 @@ export default {
components: {},
data: function() {
data: function () {
return {
isRaspberrypi: undefined,
};
},
computed: {
things: function() {
things: function () {
return this.$store.getters["wot/thingDescriptions"];
},
},
@ -52,7 +52,7 @@ export default {
},
methods: {
systemRequest: function(action) {
systemRequest: function (action) {
let message = "";
if (action == "reboot") {
message = "Restart microscope?";

View file

@ -1,6 +1,6 @@
<template>
<div v-observe-visibility="visibilityChanged">
<div id="openseadragon"></div>
<div id="openseadragon" ref="osdContainer"></div>
</div>
</template>
@ -29,7 +29,7 @@ export default {
},
},
data: function() {
data: function () {
return {
osdViewer: null,
};
@ -76,8 +76,9 @@ export default {
if (this.osdViewer) {
this.osdViewer.destroy();
}
await this.$nextTick();
this.osdViewer = OpenSeaDragon({
id: "openseadragon",
element: this.$refs.osdContainer,
crossOriginPolicy: "Anonymous",
tileSources: this.src,
showNavigationControl: false,

View file

@ -35,9 +35,7 @@
button-label="Download JPEG"
/>
</div>
<button class="uk-button uk-button-default uk-width-1-1" @click="deleteScan">
Delete
</button>
<button class="uk-button uk-button-default uk-width-1-1" @click="deleteScan">Delete</button>
<action-button
v-if="scanData.can_stitch | (scanData.stitch_available & !scanData.dzi)"
submit-label="Stitch Images"
@ -121,14 +119,8 @@ export default {
let yyyy = d.getFullYear();
let mm = d.getMonth() + 1;
let dd = d.getDate();
let HH = d
.getHours()
.toString()
.padStart(2, "0");
let MM = d
.getMinutes()
.toString()
.padStart(2, "0");
let HH = d.getHours().toString().padStart(2, "0");
let MM = d.getMinutes().toString().padStart(2, "0");
return `${HH}:${MM} ${dd}/${mm}/${yyyy}`;
},
formatDuration(duration) {

View file

@ -18,9 +18,7 @@
:button-primary="false"
:modal-progress="true"
:requires-confirmation="true"
:confirmation-message="
'<h3>Stitch all unstitched scans?</h3><br>Depending on the number and size of scans, this may be slow, and your microscope should not be used during the stitching.'
"
:confirmation-message="'<h3>Stitch all unstitched scans?</h3><br>Depending on the number and size of scans, this may be slow, and your microscope should not be used during the stitching.'"
@error="modalError"
/>
</div>
@ -62,9 +60,7 @@
<div class="gallery-grid uk-grid-match" uk-grid>
<div v-if="scansEmpty">
<h2>No scans available</h2>
<p>
There are no scans available to show.
</p>
<p>There are no scans available to show.</p>
</div>
<div v-for="scanData in paginatedScans" :key="scanData.id">
<scan-card
@ -110,7 +106,7 @@ export default {
name: "ScanListContent",
components: { actionButton, scanCard, ScanViewerModal },
data: function() {
data: function () {
return {
scans: [],
ongoing: null,
@ -162,13 +158,13 @@ export default {
});
},
created: function() {
created: function () {
// Watch for host 'ready', then update status
this.unwatchStoreFunction = this.$store.watch(
(state, getters) => {
return getters.ready;
},
ready => {
(ready) => {
if (ready) {
// If the connection is now ready, update capture list
this.updateScans();
@ -205,7 +201,7 @@ export default {
if (!scans | (scans.length == 0)) {
this.scans = scans;
}
scans.forEach(scan => {
scans.forEach((scan) => {
scan.can_stitch = !scan.stitch_available && scan.number_of_images > 3;
});
scans.sort((a, b) => {

View file

@ -6,9 +6,7 @@
:button-primary="true"
:can-terminate="true"
:requires-confirmation="true"
:confirmation-message="
'Start recalibration of the stage to the camera? This may take a while, and the microscope will be locked during this time.'
"
:confirmation-message="'Start recalibration of the stage to the camera? This may take a while, and the microscope will be locked during this time.'"
thing="camera_stage_mapping"
action="calibrate_xy"
:submit-label="'Auto-Calibrate Using Camera'"
@ -26,9 +24,9 @@
>
Download Calibration Data
</button>
<div v-if="csmMatrix != 'undefined'" style="margin:10px;">
<details
><summary>Calibration Details</summary>
<div v-if="csmMatrix != 'undefined'" style="margin: 10px">
<details>
<summary>Calibration Details</summary>
<strong>CSM calculated for images with a resolution of {{ csmResolution }}</strong>
<ul>
<li>
@ -84,7 +82,7 @@ export default {
this.updateDisplayedCSM();
}
},
getCalibrationData: async function() {
getCalibrationData: async function () {
try {
let data = await this.readThingProperty("camera_stage_mapping", "last_calibration");
if (data == {}) {
@ -101,7 +99,7 @@ export default {
this.modalError(error); // Let mixin handle error
}
},
updateDisplayedCSM: async function() {
updateDisplayedCSM: async function () {
let csmMatrix = await this.readThingProperty(
"camera_stage_mapping",
"image_to_stage_displacement_matrix",
@ -121,7 +119,7 @@ export default {
Number(((streamResolution[1] ** 2 * this.csmRatio) / this.csmResolution[0]).toFixed(0)),
];
},
onRecalibrateResponse: function() {
onRecalibrateResponse: function () {
this.modalNotify("Finished stage-to-camera calibration.");
this.updateDisplayedCSM();
},

View file

@ -23,7 +23,7 @@
export default {
name: "AppSettings",
data: function() {
data: function () {
return {};
},

View file

@ -43,7 +43,7 @@ export default {
},
computed: {
cameraUri: function() {
cameraUri: function () {
return `${this.$store.getters.baseUri}/camera/`;
},
},

View file

@ -4,16 +4,12 @@
<div>
<div class="uk-margin">
<p>Your z motor is currently {{ z_inverted }} inverted.</p>
<p>
We expect that moving in +z:
</p>
<p>We expect that moving in +z:</p>
<ul>
<li>Moves your objective up, towards the sample and illumination</li>
<li>Turns the exposed z gear anti-clockwise (when viewed from above)</li>
</ul>
<p>
If this is not the case, click the button below to switch.
</p>
<p>If this is not the case, click the button below to switch.</p>
<div class="uk-margin">
<div class="uk-margin">
<action-button
@ -41,14 +37,14 @@ export default {
ActionButton,
},
data: function() {
data: function () {
return {
z_inverted: "",
};
},
computed: {
stageType: function() {
stageType: function () {
return this.thingDescription("stage").title;
},
},

View file

@ -6,9 +6,7 @@
><input v-model="disableStream" class="uk-checkbox" type="checkbox" /> Disable Web
Stream</label
>
<p class="uk-margin-small">
This will disable the embedded web stream of the camera.
</p>
<p class="uk-margin-small">This will disable the embedded web stream of the camera.</p>
</div>
</div>
</template>
@ -18,7 +16,7 @@
export default {
name: "StreamSettings",
data: function() {
data: function () {
return {};
},

View file

@ -123,7 +123,7 @@ export default {
calibrationWizard,
},
data: function() {
data: function () {
return {
selected: "display",
currentTab: "display",
@ -131,12 +131,12 @@ export default {
},
methods: {
setTab: function(event, tab) {
setTab: function (event, tab) {
if (!(this.currentTab == tab)) {
this.currentTab = tab;
}
},
startModals: function() {
startModals: function () {
this.$refs.calibrationWizard.force_show();
},
},

View file

@ -1,7 +1,5 @@
<template>
<div v-if="!backendOK" class="uk-alert-danger">
No scan back-end found.
</div>
<div v-if="!backendOK" class="uk-alert-danger">No scan back-end found.</div>
<!-- Grid managing tab content -->
<div v-else uk-grid class="uk-height-1-1 uk-margin-remove uk-padding-remove">
<div class="control-component uk-padding-small">
@ -101,9 +99,7 @@
</div>
</div>
<div v-show="scanning">
<h2 v-if="displayImageOnRight" style="text-align: center;">
Live stitching preview
</h2>
<h2 v-if="displayImageOnRight" style="text-align: center">Live stitching preview</h2>
<mini-stream-display v-if="displayImageOnRight" />
<action-log-display id="log-display" :log="log" :task-status="taskStatus" />
<action-progress-bar :progress="progress" :task-status="taskStatus" />
@ -199,7 +195,7 @@ export default {
},
methods: {
onScanError: function(error) {
onScanError: function (error) {
this.scanRunning = false;
this.modalError(error);
},

View file

@ -39,7 +39,7 @@
export default {
name: "StreamDisplay",
data: function() {
data: function () {
return {
isVisible: false,
displaySize: [0, 0],
@ -49,14 +49,14 @@ export default {
},
computed: {
streamEnabled: function() {
streamEnabled: function () {
return this.$store.getters.ready && !this.$store.state.disableStream;
},
thisStreamOpen: function() {
thisStreamOpen: function () {
// Only a single MJPEG connection should be open at a time
return !(this.displaySize[0] == 0) && !(this.displaySize[1] == 0);
},
streamImgUri: function() {
streamImgUri: function () {
return `${this.$store.getters.baseUri}/camera/mjpeg_stream`;
},
},
@ -77,11 +77,11 @@ export default {
this.sizeObserver.observe(streamDisplayElement);
},
created: function() {
created: function () {
// Do nothing: preview stream now runs all the time
},
beforeDestroy: function() {
beforeDestroy: function () {
// Remove global signal listener to change the GPU preview state
this.$root.$off("globalTogglePreview");
// Remove global signal listener to flash the stream element
@ -96,18 +96,18 @@ export default {
visibilityChanged(isVisible) {
this.isVisible = isVisible;
},
flashStream: function() {
flashStream: function () {
// Run an animation that flashes the stream (for capture feedback)
let element = this.$refs.streamDisplay;
element.classList.remove("uk-animation-fade");
element.offsetHeight; /* trigger reflow */
element.classList.add("uk-animation-fade");
setTimeout(function() {
setTimeout(function () {
element.classList.remove("uk-animation-fade");
}, 800);
},
clickMonitor: function(event) {
clickMonitor: function (event) {
// Calculate steps from event coordinates
let xCoordinate = event.offsetX;
let yCoordinate = event.offsetY;
@ -129,13 +129,13 @@ export default {
this.$root.$emit("globalMoveInImageCoordinatesEvent", -xRelative, -yRelative);
},
handleResize: function() {
handleResize: function () {
// Only fires resize event after no resize in 500ms (prevents resize event spam)
clearTimeout(this.resizeTimeoutId);
this.resizeTimeoutId = setTimeout(this.handleDoneResize, 250);
},
handleDoneResize: function() {
handleDoneResize: function () {
// Recalculate size
this.recalculateSize();
@ -151,7 +151,7 @@ export default {
}
},
recalculateSize: function() {
recalculateSize: function () {
// Calculate stream size
let element = this.$refs.streamDisplay.parentNode;
let bound = element.getBoundingClientRect();

View file

@ -80,7 +80,7 @@ Vue.mixin({
);
return url;
},
modalConfirm: function(modalText) {
modalConfirm: function (modalText) {
var context = this;
// Stop GPU preview to show modal
@ -89,18 +89,18 @@ Vue.mixin({
// force OK to be capitalised
UIkit.modal.i18n = { ok: "OK", cancel: "Cancel" };
var showModal = function(resolve, reject) {
var showModal = function (resolve, reject) {
UIkit.modal
.confirm(modalText, { stack: true })
.then(
function() {
function () {
resolve();
},
function() {
function () {
reject();
},
)
.finally(function() {
.finally(function () {
// Re-enable the GPU preview, if it was active before the modal
if (context.$store.state.autoGpuPreview) {
context.$root.$emit("globalTogglePreview", true);
@ -111,14 +111,14 @@ Vue.mixin({
return new Promise(showModal);
},
modalNotify: function(message, status = "success") {
modalNotify: function (message, status = "success") {
UIkit.notification({
message: message,
status: status,
});
},
modalDialog: function(title, message) {
modalDialog: function (title, message) {
UIkit.modal.dialog(
`
<button class="uk-modal-close-default" type="button" uk-close></button>
@ -133,7 +133,7 @@ Vue.mixin({
);
},
modalError: function(error) {
modalError: function (error) {
var errormsg = this.getErrorMessage(error);
this.$store.commit("setErrorMessage", errormsg);
UIkit.notification({
@ -142,7 +142,7 @@ Vue.mixin({
});
},
getErrorMessage: function(error) {
getErrorMessage: function (error) {
// Format the error.
let data = this.getErrorData(error);
// Get error data may get an object. Handle edge cases and if not try to use
@ -156,7 +156,7 @@ Vue.mixin({
return String(data);
}
},
getErrorData: function(error) {
getErrorData: function (error) {
// If a response was obtained, extract the most specific message
if (error.response) {
// If the response is a nicely formatted JSON response from the server
@ -182,15 +182,15 @@ Vue.mixin({
return error;
},
showModalElement: function(element) {
showModalElement: function (element) {
UIkit.modal(element).show();
},
hideModalElement: function(element) {
hideModalElement: function (element) {
UIkit.modal(element).hide();
},
toggleModalElement: function(element) {
toggleModalElement: function (element) {
UIkit.modal(element).toggle();
},
},
@ -198,5 +198,5 @@ Vue.mixin({
new Vue({
store,
render: h => h(App),
render: (h) => h(App),
}).$mount("#app");

View file

@ -146,14 +146,14 @@ export default new Vuex.Store({
actions: {},
getters: {
baseUri: state => state.origin,
ready: state => state.available,
baseUri: (state) => state.origin,
ready: (state) => state.available,
},
plugins: [
store => {
(store) => {
// Load initial state from localStorage
LOCALSTORAGE_KEYS.forEach(key => {
LOCALSTORAGE_KEYS.forEach((key) => {
console.log(key);
const saved = localStorage.getItem(key);
if (saved !== null) {

View file

@ -28,12 +28,7 @@ export const wotStoreModule = {
// Deduplication should be done elsewhere.
let response = await axios.get(uri);
let td = response.data;
let thing_name =
name |
uri
.replace(/\/$/, "")
.split("/")
.pop();
let thing_name = name | uri.replace(/\/$/, "").split("/").pop();
commit("addThingDescription", {
thingName: thing_name,
thingDescription: td,
@ -53,38 +48,40 @@ export const wotStoreModule = {
},
},
getters: {
thingDescriptions: state => {
thingDescriptions: (state) => {
return state.thingDescriptions;
},
thingDescription: state => thingName => {
thingDescription: (state) => (thingName) => {
return state.thingDescriptions[thingName];
},
thingAvailable: state => thingName => {
thingAvailable: (state) => (thingName) => {
return thingName in state.thingDescriptions;
},
thingFormUrl: state => (thing, affordanceType, affordance, op, allowUndefined = true) => {
// Find the URL for a particular operation
let td = state.thingDescriptions[thing];
if (!td) {
if (allowUndefined) return undefined;
throw `Could not find form for ${affordanceType} ${thing}/${affordance} with op ${op}`;
}
let affordances = td[affordanceType];
let href = findFormHref(affordances[affordance], op);
if (href == undefined) {
if (allowUndefined) return undefined;
throw `Could not find form for ${affordanceType} ${thing}/${affordance} with op ${op}`;
}
// If we've found an href, prepend the `base` URL if appropriate
if (href.startsWith("http")) return href;
if ("base" in td) {
let base = td.base;
if (href.startsWith("/")) href = href.slice(1);
if (!base.endsWith("/")) base += "/";
return base + href;
}
return href;
},
thingFormUrl:
(state) =>
(thing, affordanceType, affordance, op, allowUndefined = true) => {
// Find the URL for a particular operation
let td = state.thingDescriptions[thing];
if (!td) {
if (allowUndefined) return undefined;
throw `Could not find form for ${affordanceType} ${thing}/${affordance} with op ${op}`;
}
let affordances = td[affordanceType];
let href = findFormHref(affordances[affordance], op);
if (href == undefined) {
if (allowUndefined) return undefined;
throw `Could not find form for ${affordanceType} ${thing}/${affordance} with op ${op}`;
}
// If we've found an href, prepend the `base` URL if appropriate
if (href.startsWith("http")) return href;
if ("base" in td) {
let base = td.base;
if (href.startsWith("/")) href = href.slice(1);
if (!base.endsWith("/")) base += "/";
return base + href;
}
return href;
},
thingPropertyUrl: (_state, getters) => (thing, property, op, allowUndefined) => {
// Find the URL for a particular property
return getters.thingFormUrl(thing, "properties", property, op, allowUndefined);
@ -100,7 +97,7 @@ export function findFormHref(affordance, op) {
// Find the form in the affordance that matches the given operation type
if (affordance == undefined) return undefined;
let forms = affordance.forms;
let matchingForm = forms.find(f => f.op == op || f.op.includes(op));
let matchingForm = forms.find((f) => f.op == op || f.op.includes(op));
if (matchingForm == undefined) return undefined;
return matchingForm.href;
}