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Start to move rest of python onto refactored camera API

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This commit is contained in:
Julian Stirling 2026-05-27 23:27:24 +01:00
parent e3361ebec8
commit c18d43a3a5
4 changed files with 13 additions and 20 deletions
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2
src/openflexure_microscope_server/things/__init__.py
View file

@ -34,6 +34,8 @@ class OFMThing(lt.Thing):
self._data_dir = os.path.join(
os.path.normpath(str(app_data_dir)), os.path.normpath(self.name)
)
if not os.path.exists(self.data_dir):
os.makedirs(self.data_dir)
return self
def __exit__(

22
src/openflexure_microscope_server/things/autofocus.py
View file

@ -737,11 +737,9 @@ class AutofocusThing(lt.Thing):
# Loop through the range, saving each capture to disk
for capture in captures[slice_to_save]:
self._cam.save_from_memory(
jpeg_path=os.path.join(capture_parameters.images_dir, capture.filename),
save_resolution=capture_parameters.save_resolution,
buffer_id=capture.buffer_id,
)
path = os.path.join(capture_parameters.images_dir, capture.filename)
self._cam.save_from_memory(path=path, buffer_id=capture.buffer_id)
self._cam.clear_buffers()
return sharpest_index
@ -823,7 +821,9 @@ class AutofocusThing(lt.Thing):
camera buffer_id needed for saving.
"""
stage_location = self._stage.position
buffer_id = self._cam.capture_to_memory(buffer_max=buffer_max)
buffer_id = self._cam.capture_to_memory(
capture_mode="standard", buffer_max=buffer_max
)
return CaptureInfo(
buffer_id=buffer_id,
position=stage_location,
@ -956,14 +956,8 @@ class AutofocusThing(lt.Thing):
# Save all captures
for capture in captures:
self._cam.save_from_memory(
jpeg_path=os.path.join(
capture_parameters.images_dir,
capture.filename,
),
save_resolution=capture_parameters.save_resolution,
buffer_id=capture.buffer_id,
)
path = os.path.join(capture_parameters.images_dir, capture.filename)
self._cam.save_from_memory(path=path, buffer_id=capture.buffer_id)
self._cam.clear_buffers()

6
src/openflexure_microscope_server/things/scan_workflows.py
View file

@ -164,9 +164,9 @@ class ScanWorkflow(Generic[SettingModelType], lt.Thing):
self._autofocus.fast_autofocus(dz=dz)
focus_height = self._stage.get_xyz_position()[2]
filename = f"img_{xyz_pos[0]}_{xyz_pos[1]}_{focus_height}.jpeg"
self._cam.capture_and_save(
jpeg_path=os.path.join(images_dir, filename),
save_resolution=save_resolution,
self._cam.capture_and_save_to_path(
path=os.path.join(images_dir, filename),
capture_mode="standard",
)
return True, focus_height

3
src/openflexure_microscope_server/things/stage_measure.py
View file

@ -197,9 +197,6 @@ class RangeofMotionThing(OFMThing):
"time": total_time,
}
if not os.path.exists(self.data_dir):
os.makedirs(self.data_dir)
timestamp = datetime.now().strftime("%Y_%m_%d_%H_%M")
datafile_path = os.path.join(self.data_dir, f"rom_data_{timestamp}.json")
with open(datafile_path, "w", encoding="utf-8") as f: