From 7ac77c3e89a67ca5d482ee0023136d35afdba326 Mon Sep 17 00:00:00 2001
From: jaknapper <jaknapper@hotmail.com>
Date: Fri, 25 Jul 2025 16:52:37 +0100
Subject: [PATCH 1/2] Stitch all scans button, and refresh scan tab when
 closing modals

---
 .../things/smart_scan.py                      | 16 +++++++++++++
 .../labThingsComponents/actionButton.vue      |  2 ++
 .../tabContentComponents/scanListContent.vue  | 24 +++++++++++++++++--
 webapp/src/main.js                            |  1 +
 4 files changed, 41 insertions(+), 2 deletions(-)

diff --git a/src/openflexure_microscope_server/things/smart_scan.py b/src/openflexure_microscope_server/things/smart_scan.py
index f7e5d675..c295896e 100644
--- a/src/openflexure_microscope_server/things/smart_scan.py
+++ b/src/openflexure_microscope_server/things/smart_scan.py
@@ -977,3 +977,19 @@ class SmartScanThing(lt.Thing):
         """
         zip_fname = self._scan_dir_manager.zip_scan(scan_name, final_version=True)
         return ZipBlob.from_file(zip_fname)
+
+    @lt.thing_action
+    def stitch_all_scans(
+        self, logger: lt.deps.InvocationLogger, cancel: lt.deps.CancelHook
+    ):
+        """Check the list of scans, and stitch any that don't have a DZI associated with it.
+
+        Raises:
+            RuntimeError if the microscope is currently running a scan
+
+        """
+        if self._scan_logger is not None:
+            raise RuntimeError("Can't stitch previous scans while a scan is ongoing")
+        for scan in self._scan_dir_manager.all_scans_info():
+            if scan.dzi is None:
+                self.stitch_scan(logger=logger, cancel=cancel, scan_name=scan.name)
diff --git a/webapp/src/components/labThingsComponents/actionButton.vue b/webapp/src/components/labThingsComponents/actionButton.vue
index 1defd4dd..73ca9537 100644
--- a/webapp/src/components/labThingsComponents/actionButton.vue
+++ b/webapp/src/components/labThingsComponents/actionButton.vue
@@ -344,10 +344,12 @@ export default {
 
     hideModal() {
       UIkit.modal(this.$refs.statusModal).hide();
+      this.$root.$emit("modalClosed");
     },
 
     terminateTask: function() {
       axios.delete(this.taskUrl, { baseURL: this.$store.getters.baseUri });
+      this.$root.$emit("modalClosed");
     }
   }
 };
diff --git a/webapp/src/components/tabContentComponents/scanListContent.vue b/webapp/src/components/tabContentComponents/scanListContent.vue
index 5446a933..65363c43 100644
--- a/webapp/src/components/tabContentComponents/scanListContent.vue
+++ b/webapp/src/components/tabContentComponents/scanListContent.vue
@@ -10,6 +10,22 @@
       <!-- Right side buttons -->
       <div class="uk-navbar-right">
         <div class="uk-grid">
+        <div style="margin-top:5px;margin-bottom: 2px">
+            <action-button
+                class="uk-width-1-1"
+                thing="smart_scan"
+                action="stitch_all_scans"
+                submit-label="Stitch All Remaining"
+                :can-terminate="true"
+                :button-primary="false"
+                :modal-progress="true"
+                :requires-confirmation="true"
+                :confirmation-message="
+                  '<h3>Stitch all unstitched scans?</h3><br>Depending on the number and size of scans, this may be slow, and your microscope should not be used during the stitching.'
+                "
+                @error="modalError"
+                />
+          </div>
           <div>
             <button
               class="uk-button uk-button-default uk-width-1-1"
@@ -117,12 +133,11 @@
                 thing="smart_scan"
                 action="stitch_scan"
                 v-if="item.can_stitch | (item.stitch_available & !item.dzi)"
-                :can-terminate="false"
+                :can-terminate="true"
                 :submit-data="{ scan_name: item.name }"
                 :button-primary="false"
                 :modal-progress="true"
                 @error="modalError"
-                @response="updateScans"
               />
               <button
                 v-if="item.dzi" class="uk-button uk-button-default uk-width-1-1"
@@ -200,6 +215,10 @@ export default {
     this.$root.$on("globalUpdateScans", () => {
       this.updateScans();
     });
+    this.$root.$on("modalClosed", () => {
+    // Handle the modal closed event here
+      this.updateScans();
+    });
   },
 
   created: function() {
@@ -228,6 +247,7 @@ export default {
       this.unwatchStoreFunction();
       this.unwatchStoreFunction = null;
     }
+    this.$root.$off("modalClosed"); // Clean up event listener
   },
 
   methods: {
diff --git a/webapp/src/main.js b/webapp/src/main.js
index d49fbd5d..0b4eaf52 100644
--- a/webapp/src/main.js
+++ b/webapp/src/main.js
@@ -101,6 +101,7 @@ Vue.mixin({
             if (context.$store.state.autoGpuPreview) {
               context.$root.$emit("globalTogglePreview", true);
             }
+          context.$root.$emit("modalClosed");
           });
       };
       return new Promise(showModal);

From d6f1502593be1d2bdc3dae497b05aaf5196d87d9 Mon Sep 17 00:00:00 2001
From: Joe Knapper <joe.knapper@glasgow.ac.uk>
Date: Fri, 25 Jul 2025 16:42:27 +0000
Subject: [PATCH 2/2] Apply suggestions from code review of branch Stitch-all

Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
---
 src/openflexure_microscope_server/things/smart_scan.py | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/src/openflexure_microscope_server/things/smart_scan.py b/src/openflexure_microscope_server/things/smart_scan.py
index c295896e..044ab3a8 100644
--- a/src/openflexure_microscope_server/things/smart_scan.py
+++ b/src/openflexure_microscope_server/things/smart_scan.py
@@ -984,8 +984,7 @@ class SmartScanThing(lt.Thing):
     ):
         """Check the list of scans, and stitch any that don't have a DZI associated with it.
 
-        Raises:
-            RuntimeError if the microscope is currently running a scan
+        :raises RuntimeError: if the microscope is currently running a scan
 
         """
         if self._scan_logger is not None: