rahix/openflexure-microscope-server
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Switch to updated "preview stitch" mode in stitching

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jaknapper 2025-05-21 15:06:23 +01:00 • committed by Julian Stirling
parent 4f98e17b5f
commit a499d9230c
1 changed files with 3 additions and 2 deletions
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5
src/openflexure_microscope_server/things/smart_scan.py
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@ -932,7 +932,7 @@ class SmartScanThing(Thing):
raise FileNotFoundError("No latest scan found") raise FileNotFoundError("No latest scan found")
images_dir = self.images_dir_for_scan(self.latest_scan_name) images_dir = self.images_dir_for_scan(self.latest_scan_name)
stitch_path = os.path.join(images_dir, "stitched_from_stage.jpg") stitch_path = os.path.join(images_dir, "preview.jpg")
if not os.path.isfile(stitch_path): if not os.path.isfile(stitch_path):
raise FileNotFoundError("Latest scan has no preview stitch") raise FileNotFoundError("Latest scan has no preview stitch")
return stitch_path return stitch_path
@ -987,7 +987,7 @@ class SmartScanThing(Thing):
[ [
STITCHING_CMD, STITCHING_CMD,
"--stitching_mode", "--stitching_mode",
"only_stage_stitch", "preview_stitch",
"--minimum_overlap", "--minimum_overlap",
f"{min_overlap}", f"{min_overlap}",
self._ongoing_scan_images_dir, self._ongoing_scan_images_dir,
@ -1166,6 +1166,7 @@ class SmartScanThing(Thing):
"stitched_from", "stitched_from",
"stitched.om", "stitched.om",
"stitching_correlations", "stitching_correlations",
"preview.jp",
] ]
with zipfile.ZipFile(zip_fname, mode="a") as scan_zip: with zipfile.ZipFile(zip_fname, mode="a") as scan_zip: