Formatted with Ruff
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19 changed files with 680 additions and 392 deletions
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@ -16,13 +16,19 @@ from openflexure_microscope_server.things.autofocus import AutofocusThing
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from openflexure_microscope_server.things.camera_stage_mapping import CameraStageMapper
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from openflexure_microscope_server.things import camera_stage_mapping
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camera_stage_mapping.DEFAULT_SETTLING_TIME = 0 # skip the settling time for tests
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camera_stage_mapping.DEFAULT_SETTLING_TIME = 0 # skip the settling time for tests
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@pytest.fixture
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def thing_server():
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temp_folder = tempfile.TemporaryDirectory()
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server = ThingServer(settings_folder=temp_folder.name)
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server.add_thing(SimulatedCamera(shape=(240, 320, 3), canvas_shape=(960, 1240, 3), frame_interval=0.01), "/camera/")
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server.add_thing(
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SimulatedCamera(
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shape=(240, 320, 3), canvas_shape=(960, 1240, 3), frame_interval=0.01
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),
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"/camera/",
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)
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server.add_thing(DummyStage(step_time=0.000001), "/stage/")
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server.add_thing(AutofocusThing(), "/autofocus/")
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server.add_thing(CameraStageMapper(), "/camera_stage_mapping/")
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@ -30,27 +36,32 @@ def thing_server():
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# NB yield is important: otherwise, the temp folder gets deleted before the test runs
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yield server
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@pytest.fixture
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def client(thing_server):
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with TestClient(thing_server.app) as client:
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yield client
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@pytest.fixture
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def slower_client(thing_server):
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thing_server.things["/stage/"].step_time = 0.0001
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with TestClient(thing_server.app) as client:
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yield client
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def test_autofocus(slower_client):
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client = slower_client
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autofocus = ThingClient.from_url("/autofocus/", client)
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_ = autofocus.fast_autofocus()
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def test_grab_jpeg(client):
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camera = ThingClient.from_url("/camera/", client)
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blob = camera.grab_jpeg()
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_image = Image.open(blob.open())
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def test_capture_jpeg_metadata(client):
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camera = ThingClient.from_url("/camera/", client)
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blob = camera.capture_jpeg()
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@ -60,6 +71,7 @@ def test_capture_jpeg_metadata(client):
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metadata = json.loads(encoded_metadata)
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assert "position" in metadata["/stage/"]
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def test_stage(client):
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stage = ThingClient.from_url("/stage/", client)
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start = stage.position
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@ -73,11 +85,13 @@ def test_stage(client):
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for s, p in zip(start.values(), pos.values()):
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assert s == p
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def test_capture_array(client):
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camera = ThingClient.from_url("/camera/", client)
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array = np.asarray(camera.capture_array())
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assert array.shape == (240, 320, 3)
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# Currently this fails, not yet sure why.
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def test_camera_stage_mapping_calibration(client):
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camera_stage_mapping = ThingClient.from_url("/camera_stage_mapping/", client)
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