Create basic gallery class that finds Things that want to show data
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9 changed files with 97 additions and 35 deletions
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@ -1,6 +1,8 @@
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"""Fixtures for all test suites."""
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import json
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import logging
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import os
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import re
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from collections.abc import Iterable
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from contextlib import contextmanager
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@ -10,6 +12,24 @@ import pytest
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from labthings_fastapi.testing import create_thing_without_server
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from .shared_utils.lt_test_utils import LabThingsTestEnv
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THIS_DIR = os.path.dirname(os.path.abspath(__file__))
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REPO_ROOT = os.path.dirname(THIS_DIR)
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SIM_CONFIG = os.path.join(REPO_ROOT, "ofm_config_simulation.json")
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@pytest.fixture
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def simulation_test_env():
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"""Yield a server with the configuration from the simulation json."""
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with open(SIM_CONFIG, "r", encoding="utf-8") as f_obj:
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config_dict = json.load(f_obj)
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with LabThingsTestEnv(
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things=config_dict["things"],
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application_config=config_dict["application_config"],
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) as env:
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yield env
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@pytest.fixture
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def check_side_effect(caplog):
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@ -12,7 +12,6 @@ it has been moved as it artificaially inflated coverage.
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"""
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import json
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import os
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import numpy as np
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import piexif
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@ -21,29 +20,11 @@ from PIL import Image
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import labthings_fastapi as lt
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from ..shared_utils.lt_test_utils import LabThingsTestEnv
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THIS_DIR = os.path.dirname(os.path.abspath(__file__))
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REPO_ROOT = os.path.dirname(os.path.dirname(THIS_DIR))
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SIM_CONFIG = os.path.join(REPO_ROOT, "ofm_config_simulation.json")
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@pytest.fixture
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def test_env():
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"""Yield a server with a very basic configuration."""
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with open(SIM_CONFIG, "r", encoding="utf-8") as f_obj:
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config_dict = json.load(f_obj)
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with LabThingsTestEnv(
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things=config_dict["things"],
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application_config=config_dict["application_config"],
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) as env:
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yield env
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def test_autofocus(test_env):
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def test_autofocus(simulation_test_env):
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"""Test Fast Autofocus can run doesn't raise an exception."""
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stage = test_env.get_thing_client("stage")
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autofocus = test_env.get_thing_client("autofocus")
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stage = simulation_test_env.get_thing_client("stage")
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autofocus = simulation_test_env.get_thing_client("autofocus")
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assert stage.position["z"] == 0
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# Autofocus 5 times and check each ends within 500 steps
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for i in range(5):
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@ -51,17 +32,17 @@ def test_autofocus(test_env):
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assert abs(stage.position["z"]) < 500, f"Autofocus failed on iteration {i}"
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def test_grab_jpeg(test_env):
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def test_grab_jpeg(simulation_test_env):
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"""Check that grab_jpeg returns a blob that can be opened."""
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camera = test_env.get_thing_client("camera")
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camera = simulation_test_env.get_thing_client("camera")
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blob = camera.grab_jpeg()
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image = Image.open(blob.open())
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assert image.size == (820, 616)
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def test_capture_jpeg_metadata(test_env):
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def test_capture_jpeg_metadata(simulation_test_env):
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"""Check that the position is encoded into the image metadata."""
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camera = test_env.get_thing_client("camera")
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camera = simulation_test_env.get_thing_client("camera")
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blob = camera.capture_jpeg()
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image = Image.open(blob.open())
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exif_dict = piexif.load(image.info["exif"])
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@ -72,9 +53,9 @@ def test_capture_jpeg_metadata(test_env):
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assert image.size == (820, 616)
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def test_stage(test_env):
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def test_stage(simulation_test_env):
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"""Test moving the stage forwards and backwards."""
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stage = test_env.get_thing_client("stage")
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stage = simulation_test_env.get_thing_client("stage")
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start = stage.position
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move = {"x": 1, "y": 2, "z": 3}
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move_back = {"x": -1, "y": -2, "z": -3}
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@ -95,20 +76,20 @@ def test_stage(test_env):
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assert start["z"] == pos["z"]
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def test_capture_array(test_env):
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def test_capture_array(simulation_test_env):
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"""Capture array from simulation and check the size is as expected."""
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camera = test_env.get_thing_client("camera")
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camera = simulation_test_env.get_thing_client("camera")
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array = np.asarray(camera.capture_array())
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assert array.shape == (616, 820, 3)
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def test_camera_stage_mapping_calibration(test_env):
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def test_camera_stage_mapping_calibration(simulation_test_env):
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"""Check that camera stage mapping runs and returns the expected result."""
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camera = test_env.get_thing_client("camera")
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camera = simulation_test_env.get_thing_client("camera")
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# Remove camera settling time for speed.
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camera.settling_time = 0
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csm = test_env.get_thing_client("camera_stage_mapping")
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stage = test_env.get_thing_client("stage")
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csm = simulation_test_env.get_thing_client("camera_stage_mapping")
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stage = simulation_test_env.get_thing_client("stage")
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# Check it starts uncalibrated
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assert csm.calibration_required
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17
tests/unit_tests/test_gallery.py
Normal file
17
tests/unit_tests/test_gallery.py
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@ -0,0 +1,17 @@
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"""Tests that captures have the expected metadata."""
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def test_gallery_thing_finds_all_providers(simulation_test_env):
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"""Check the gallery identifies the correct Things that will provide data."""
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gallery = simulation_test_env.get_thing_by_name("gallery")
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snake_workflow = simulation_test_env.get_thing_by_name("snake_workflow")
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smart_scan = simulation_test_env.get_thing_by_name("smart_scan")
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camera = simulation_test_env.get_thing_by_name("camera")
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assert snake_workflow not in gallery.all_ofm_things.values()
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assert camera in gallery.all_ofm_things.values()
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assert smart_scan in gallery.all_ofm_things.values()
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assert snake_workflow not in gallery.gallery_providing_things.values()
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assert camera not in gallery.gallery_providing_things.values()
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assert smart_scan in gallery.gallery_providing_things.values()
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