rahix/openflexure-microscope-server
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Merge branch 'settling_before_stack' into 'v3'

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Settling time as global, settle before taking first image in stack

See merge request openflexure/openflexure-microscope-server!272
This commit is contained in:
Joe Knapper 2025-05-21 15:16:14 +00:00
commit 8431cd1d15
1 changed files with 4 additions and 1 deletions
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src/openflexure_microscope_server/things/autofocus.py
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@ -34,6 +34,8 @@ from .capture import CaptureThing
CaptureDep = direct_thing_client_dependency(CaptureThing, "/capture/") CaptureDep = direct_thing_client_dependency(CaptureThing, "/capture/")
SETTLING_TIME = 0.3
class JPEGSharpnessMonitor: class JPEGSharpnessMonitor:
__globals__ = globals() # Required for FastAPI dependency __globals__ = globals() # Required for FastAPI dependency
@ -295,6 +297,8 @@ class AutofocusThing(Thing):
stage.move_relative(z=-stack_z_range / 2) stage.move_relative(z=-stack_z_range / 2)
for capture_count in range(images_to_capture): for capture_count in range(images_to_capture):
time.sleep(SETTLING_TIME)
jpeg_path = os.path.join( jpeg_path = os.path.join(
stack_dir, stack_dir,
f"{capture_count}.jpeg", f"{capture_count}.jpeg",
@ -309,7 +313,6 @@ class AutofocusThing(Thing):
# If the stack isn't complete yet, move # If the stack isn't complete yet, move
if capture_count + 1 < images_to_capture: if capture_count + 1 < images_to_capture:
stage.move_relative(z=stack_dz) stage.move_relative(z=stack_dz)
time.sleep(0.3)
self.copy_central_image_from_stack(images_dir, stack_dir) self.copy_central_image_from_stack(images_dir, stack_dir)