Configuration files and other tweaks

The OFM server can now be run in "stub" mode on
my development machine, using an OpenCV
camera feed.

.gitignore

@@ -79,6 +79,7 @@ openflexure_microscope/cobertura.xml
 
 # labthings settings
 /settings/
+/openflexure_settings/
 
 # web app build
 /src/openflexure_microscope_server/static/

ofm_config_full.json

@@ -8,13 +8,12 @@
         "/system_control/": "openflexure_microscope_server.things.system_control:SystemControlThing",
         "/settings/": "openflexure_microscope_server.things.settings_manager:SettingsManager",
         "/smart_scan/": {
-            "class": "openflexure_microscope_server.things.smart_scan:SmartScan",
+            "class": "openflexure_microscope_server.things.smart_scan:SmartScanThing",
             "kwargs": {
                 "path_to_openflexure_stitch": "application/openflexure-stitching/.venv/bin/openflexure-stitch"
             }
         },
         "/background_detect/": "openflexure_microscope_server.things.smart_scan:BackgroundDetectThing",
-        "/api_test/": "openflexure_microscope_server.things.test:APITestThing"
     },
     "settings_folder": "./openflexure_settings/"
 }

ofm_config_stub.json

@@ -1,10 +1,19 @@
 {
     "things": {
-        "/camera/": "openflexure_microscope_server.things.opencv_camera:OpenCVCamera",
-        "/stage/": "openflexure_microscope_server.things.dummy_stage:DummyStage",
-        
+        "/camera/": "openflexure_microscope_server.things.camera.opencv:OpenCVCamera",
+        "/stage/": "openflexure_microscope_server.things.stage.dummy:DummyStage",
+        "/auto_recentre_stage/": "openflexure_microscope_server.things.auto_recentre_stage:RecentringThing",
+        "/autofocus/": "openflexure_microscope_server.things.autofocus:AutofocusThing",
+        "/camera_stage_mapping/": "openflexure_microscope_server.things.camera_stage_mapping:CameraStageMapper",
         "/system_control/": "openflexure_microscope_server.things.system_control:SystemControlThing",
         "/settings/": "openflexure_microscope_server.things.settings_manager:SettingsManager",
+        "/smart_scan/": {
+            "class": "openflexure_microscope_server.things.smart_scan:SmartScanThing",
+            "kwargs": {
+                "path_to_openflexure_stitch": "application/openflexure-stitching/.venv/bin/openflexure-stitch"
+            }
+        },
+        "/background_detect/": "openflexure_microscope_server.things.smart_scan:BackgroundDetectThing",
         "/api_test/": "openflexure_microscope_server.things.test:APITestThing"
     },
     "settings_folder": "./openflexure_settings/"

pyproject.toml

@@ -22,6 +22,7 @@ dependencies = [
   "piexif",
   "scipy ~= 1.6",
   "opencv-python ~= 4.7.0",
+  "pillow ~= 10.4",
   "anyio ~= 4.0",
 ]