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Co-authored-by: Julian Stirling <julian@julianstirling.co.uk>
This commit is contained in:
Joe Knapper 2025-06-05 17:09:37 +00:00
parent 41f6c8879a
commit 69db7b4041
1 changed files with 5 additions and 5 deletions
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src/openflexure_microscope_server/things/camera/simulation.py
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@ -104,15 +104,15 @@ class SimulatedCamera(BaseCamera):
"""Generate an image with blobs based on supplied coordinates""" """Generate an image with blobs based on supplied coordinates"""
canvas_width, canvas_height, _ = self.canvas_shape canvas_width, canvas_height, _ = self.canvas_shape
image_width, image_height, _ = self.shape image_width, image_height, _ = self.shape
pos = [x * RATIO for x in pos] pos = tuple(x * RATIO for x in pos)
top_left = ( top_left = (
int(pos[0]) - image_width // 2 - canvas_width // 2, int(pos[0]) - image_width // 2 - canvas_width // 2,
int(pos[1]) - image_height // 2 - canvas_height // 2, int(pos[1]) - image_height // 2 - canvas_height // 2,
) )
focused_image = self.canvas[ x_slice = slice(top_left[0], top_left[0] + self.shape[0])
tuple(slice(top_left[i], top_left[i] + self.shape[i]) for i in range(2)) y_slice = slice(top_left[1], top_left[1] + self.shape[0])
+ (slice(None),) z_slice = slice(None)
] focused_image = self.canvas[(x_slice, y_slice, z_slice)]
image = gaussian_filter( image = gaussian_filter(
focused_image, focused_image,
sigma=np.abs(pos[2]) / 5, sigma=np.abs(pos[2]) / 5,