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Fixed scan to use newer fast autofocus

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This commit is contained in:
Joel Collins 2020-01-30 14:22:03 +00:00
parent 945c7e4e27
commit 65fc58c651
2 changed files with 15 additions and 10 deletions
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6
openflexure_microscope/api/default_extensions/scan.py
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@ -197,13 +197,15 @@ def tile(
# Refocus
if autofocus_enabled:
if fast_autofocus:
autofocus_extension.fast_autofocus(
# Run fast autofocus. Client should provide dz ~ 2000
autofocus_extension.fast_up_down_up_autofocus(
microscope,
dz=autofocus_dz,
target_z=-z_stack_dz / 2.0, # Finish below the focus
initial_move_up=False, # We're already at the top of the scan
)
else:
logging.debug("Running autofocus")
# Run slow autofocus. Client should provide dz ~ 50
autofocus_extension.autofocus(
range(-3 * autofocus_dz, 4 * autofocus_dz, autofocus_dz)
)