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Joe Knapper 2026-02-25 13:19:38 +00:00 committed by Julian Stirling
parent 43fa793698
commit 63338f8ea0
4 changed files with 111 additions and 191 deletions

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@ -27,6 +27,7 @@ from openflexure_microscope_server.things.autofocus import (
_get_capture_index_by_id,
_get_peak_turning_point,
)
from openflexure_microscope_server.things.camera import CaptureParams
from openflexure_microscope_server.things.scan_workflows import HistoScanWorkflow
RANDOM_GENERATOR = np.random.default_rng()
@ -108,7 +109,8 @@ def test_stack_params_negative_images_to_save(save_ims, extra_ims):
# Depending on the values multiple messages are possible
match = (
"(Can't test for focus with fewer than 3 images|"
"Images to save must be positive and odd)"
"Images to save must be positive and odd)|"
"Invalid number of images to save"
)
with pytest.raises(ValueError, match=match):
SmartStackParams(
@ -152,7 +154,8 @@ def test_even_images_to_save(save_ims, extra_ims):
"""
match = (
"(Can't test for focus with fewer than 3 images|"
"Images to save must be positive and odd)"
"Images to save must be positive and odd)|"
"Invalid number of images to save"
)
with pytest.raises(ValueError, match=match):
SmartStackParams(
@ -942,80 +945,61 @@ def test_run_basic_stack_end_origin(
assert final_z == expected_final_z, "Final Z position for END origin incorrect"
def test_invalid_stack_images_raises(autofocus_thing, mocker):
def test_invalid_stack_images_raises():
"""Test basic stack raises expected error for negative or zero image count."""
for capture_count in [-3, 0]:
stack_params = StackParams(
stack_dz=10,
images_to_save=capture_count,
settling_time=0,
backlash_correction=0,
origin=StackOrigin.START,
)
capture_params = mocker.Mock()
with pytest.raises(ValueError, match="Invalid number of images to save"):
autofocus_thing.run_basic_stack(stack_params, capture_params)
StackParams(
stack_dz=10,
images_to_save=capture_count,
settling_time=0,
backlash_correction=0,
origin=StackOrigin.START,
)
def test_invalid_stack_settling_raises(autofocus_thing, mocker):
def test_invalid_stack_settling_raises():
"""Test basic stack raises expected error for negative settling time."""
stack_params = StackParams(
stack_dz=10,
images_to_save=1,
settling_time=-10,
backlash_correction=0,
origin=StackOrigin.START,
)
capture_params = mocker.Mock()
with pytest.raises(ValueError, match="Invalid settling time"):
autofocus_thing.run_basic_stack(stack_params, capture_params)
StackParams(
stack_dz=10,
images_to_save=1,
settling_time=-1,
backlash_correction=0,
origin=StackOrigin.START,
)
def test_invalid_capture_dir_raises(autofocus_thing, mocker):
@pytest.mark.parametrize(
("bad_path", "match_err"),
[
("", "Must be a non-empty string"),
(None, "Input should be a valid string"),
(67, "Input should be a valid string"),
],
)
def test_invalid_capture_dir_raises(bad_path, match_err):
"""Test basic stack raises expected error for bad image dir paths."""
for bad_path in ["", None, 67, ["path"]]:
stack_params = StackParams(
stack_dz=10,
images_to_save=1,
settling_time=0,
backlash_correction=0,
origin=StackOrigin.START,
)
capture_params = mocker.Mock()
capture_params.images_dir = bad_path
capture_params.save_resolution = (100, 100)
mocker.patch.object(autofocus_thing._cam, "save_from_memory")
mocker.patch.object(autofocus_thing._cam, "clear_buffers")
with pytest.raises(ValueError, match="Invalid images_dir"):
autofocus_thing.run_basic_stack(stack_params, capture_params)
with pytest.raises(ValueError, match=match_err):
CaptureParams(images_dir=bad_path, save_resolution=(20, 20))
def test_invalid_capture_res_raises(autofocus_thing, mocker):
@pytest.mark.parametrize(
("bad_res", "match_err"),
[
((-100, 50), "Invalid save_resolution:"),
((20, 0), "Invalid save_resolution:"),
("", "Input should be a valid tuple"),
(None, "Input should be a valid tuple"),
(67, "Input should be a valid tuple"),
(
["path"],
"Input should be a valid integer, unable to parse string as an integer",
),
((20, 20, 20), "Tuple should have at most 2 items"),
],
)
def test_invalid_capture_res_raises(bad_res, match_err):
"""Test basic stack raises expected error for invalid save resolutions."""
for bad_res in [
"",
None,
67,
["path"],
(-100, 50),
(20, 0),
(20, 20, 20),
[30, 30],
]:
stack_params = StackParams(
stack_dz=10,
images_to_save=1,
settling_time=0,
backlash_correction=0,
origin=StackOrigin.START,
)
capture_params = mocker.Mock()
capture_params.images_dir = "dummy"
capture_params.save_resolution = bad_res
autofocus_thing.capture_stack_image = mocker.Mock()
with pytest.raises(ValueError, match="Invalid save_resolution:"):
autofocus_thing.run_basic_stack(stack_params, capture_params)
with pytest.raises(ValueError, match=match_err):
CaptureParams(images_dir="dummy", save_resolution=bad_res)