rahix/openflexure-microscope-server
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions

Apply suggestions from code review of branch simplify-csm-interface

Browse source 
Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
This commit is contained in:
Julian Stirling 2025-07-14 15:33:50 +00:00
parent 705cf73173
commit 59a5246904
2 changed files with 10 additions and 6 deletions
Download patch file Download diff file Expand all files Collapse all files

12
src/openflexure_microscope_server/things/camera/__init__.py
View file

@ -225,7 +225,7 @@ class BaseCamera(lt.Thing):
* The array is downsamples by the thing property `downsampled_array_factor`.
* The default capture array arguments are used.
This method is provides the interface expected by the camera_stage_mapping.
This method provides the interface expected by the camera_stage_mapping.
"""
img = self.capture_array()
return downsample(self.downsampled_array_factor, img)
@ -440,13 +440,17 @@ class BaseCamera(lt.Thing):
raise IOError(f"An error occurred while saving {jpeg_path}") from e
settling_time = lt.ThingSetting(float, 0.2)
"""The the settling time when calling the ``settle()`` method."""
"""The settling time when calling the ``settle()`` method."""
@lt.thing_action
def settle(self) -> None:
"""Sleep for the settling time, ready to provide a fresh frame.
This method is provides the interface expected by the camera_stage_mapping.
This function will sleep for the given time, and clear the buffer after sleeping.
As such, the next frame captured from the camera after running this function will
always be captured after settling.
This method provides the interface expected by the camera_stage_mapping.
"""
time.sleep(self.settling_time)
self.discard_frames()
@ -464,7 +468,7 @@ def downsample(factor: int, image: np.ndarray) -> np.ndarray:
* calculate each pixel as the mean of each ``factor * factor`` square without
interpolation.
* If the image is not an integer multiple of the resampling factor, discard
the left-over pixels to avoids odd edge effects and keep performance quick.
the left-over pixels to avoid odd edge effects and keep performance quick.
"""
if factor == 1:
return image

4
src/openflexure_microscope_server/things/stage/__init__.py
View file

@ -94,7 +94,7 @@ class BaseStage(lt.Thing):
:raises KeyError: if this stage does not have axes named "x", "y", and "z".
This method is provides the interface expected by the camera_stage_mapping.
This method provides the interface expected by the camera_stage_mapping.
"""
position_dict = self.position
return (position_dict["x"], position_dict["y"], position_dict["z"])
@ -111,7 +111,7 @@ class BaseStage(lt.Thing):
:raises KeyError: if this stage does not have axes named "x", "y", and "z".
This method is provides the interface expected by the camera_stage_mapping.
This method provides the interface expected by the camera_stage_mapping.
"""
self.move_absolute(cancel=cancel, x=xyz_pos[0], y=xyz_pos[1], z=xyz_pos[2])