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This commit is contained in:
Joel Collins 2019-09-15 14:17:52 +01:00
parent e213647217
commit 5966ce29be
57 changed files with 1938 additions and 1414 deletions
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42
openflexure_microscope/plugins/default/scan/api.py
View file

@ -1,36 +1,46 @@
from openflexure_microscope.devel import MicroscopeViewPlugin, JsonResponse, request, jsonify, abort
from openflexure_microscope.devel import (
MicroscopeViewPlugin,
JsonResponse,
request,
jsonify,
abort,
)
import logging
class TileScanAPI(MicroscopeViewPlugin):
def post(self):
payload = JsonResponse(request)
# Get params
filename = payload.param('filename')
temporary = payload.param('temporary', default=False, convert=bool)
filename = payload.param("filename")
temporary = payload.param("temporary", default=False, convert=bool)
step_size = payload.param('step_size', default=[2000, 1500, 100], convert=list)
step_size = payload.param("step_size", default=[2000, 1500, 100], convert=list)
step_size = [int(i) for i in step_size]
grid = payload.param('grid', default=[3, 3, 5], convert=list)
grid = payload.param("grid", default=[3, 3, 5], convert=list)
grid = [int(i) for i in grid]
style = payload.param('style', default='raster', convert=str)
autofocus_dz = payload.param('autofocus_dz', default=50, convert=int)
fast_autofocus = payload.param('fast_autofocus', default=False, convert=bool)
style = payload.param("style", default="raster", convert=str)
autofocus_dz = payload.param("autofocus_dz", default=50, convert=int)
fast_autofocus = payload.param("fast_autofocus", default=False, convert=bool)
use_video_port = payload.param('use_video_port', default=True, convert=bool)
resize = payload.param('size', default=None)
use_video_port = payload.param("use_video_port", default=True, convert=bool)
resize = payload.param("size", default=None)
if resize:
if ('width' in resize) and ('height' in resize):
resize = (int(resize['width']), int(resize['height'])) # Convert dict to tuple
if ("width" in resize) and ("height" in resize):
resize = (
int(resize["width"]),
int(resize["height"]),
) # Convert dict to tuple
else:
abort(404)
bayer = payload.param('bayer', default=False, convert=bool)
metadata = payload.param('metadata', default={}, convert=dict)
tags = payload.param('tags', default=[], convert=list)
bayer = payload.param("bayer", default=False, convert=bool)
metadata = payload.param("metadata", default={}, convert=dict)
tags = payload.param("tags", default=[], convert=list)
logging.info("Running tile scan...")
task = self.microscope.task.start(
@ -46,7 +56,7 @@ class TileScanAPI(MicroscopeViewPlugin):
bayer=bayer,
fast_autofocus=fast_autofocus,
metadata=metadata,
tags=tags
tags=tags,
)
# return a handle on the autofocus task