diff --git a/ofm_config_full.json b/ofm_config_full.json index 7ae0469d..ecedc5a4 100644 --- a/ofm_config_full.json +++ b/ofm_config_full.json @@ -10,7 +10,7 @@ "/smart_scan/": { "class": "openflexure_microscope_server.things.smart_scan:SmartScanThing", "kwargs": { - "path_to_openflexure_stitch": "application/openflexure-stitching/.venv/bin/openflexure-stitch" + "path_to_openflexure_stitch": "openflexure-stitch" } }, "/background_detect/": "openflexure_microscope_server.things.background_detect:BackgroundDetectThing", diff --git a/ofm_config_simulation.json b/ofm_config_simulation.json index 62f427fb..d06cf005 100644 --- a/ofm_config_simulation.json +++ b/ofm_config_simulation.json @@ -10,7 +10,7 @@ "/smart_scan/": { "class": "openflexure_microscope_server.things.smart_scan:SmartScanThing", "kwargs": { - "path_to_openflexure_stitch": "application/openflexure-stitching/.venv/bin/openflexure-stitch" + "path_to_openflexure_stitch": "openflexure-stitch" } }, "/background_detect/": "openflexure_microscope_server.things.smart_scan:BackgroundDetectThing", diff --git a/ofm_config_stub.json b/ofm_config_stub.json index 14aa1d3f..b207287b 100644 --- a/ofm_config_stub.json +++ b/ofm_config_stub.json @@ -10,7 +10,7 @@ "/smart_scan/": { "class": "openflexure_microscope_server.things.smart_scan:SmartScanThing", "kwargs": { - "path_to_openflexure_stitch": "application/openflexure-stitching/.venv/bin/openflexure-stitch" + "path_to_openflexure_stitch": "openflexure-stitch" } }, "/background_detect/": "openflexure_microscope_server.things.smart_scan:BackgroundDetectThing", diff --git a/pyproject.toml b/pyproject.toml index 1e4e4c77..fef6c92f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -19,6 +19,7 @@ dependencies = [ "labthings-sangaboard", "camera-stage-mapping ~= 0.1.10", "opencv-python ~= 4.11.0", + "openflexure-stitching[libvips]==0.1.0", "pillow ~= 10.4", "anyio ~= 4.0", "numpy ~= 2.2",