Add new tests new scan directory function and for scan data serialisation
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4 changed files with 209 additions and 6 deletions
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@ -7,6 +7,7 @@ import shutil
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import logging
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import random
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import time
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import json
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from collections import namedtuple
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import pytest
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@ -17,8 +18,10 @@ from openflexure_microscope_server.scan_directories import (
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ScanInfo,
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get_files_in_zip,
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NotEnoughFreeSpaceError,
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SCAN_DATA_FILENAME,
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)
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from .test_scan_data import _fake_scan_data
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from .utilities import assert_unique_of_length
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# A global logger to pass in as an Invocation Logger
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@ -281,6 +284,46 @@ def test_get_final_stitch():
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assert scan_dir.get_final_stitch_name() == fake_scan_name
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def test_get_scan_data_path():
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"""Check that a scan data path behaves as expected."""
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_clear_scan_dir()
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scan_dir_manager = ScanDirectoryManager(BASE_SCAN_DIR)
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scan_dir = scan_dir_manager.new_scan_dir("fake_scan")
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scan_name = scan_dir.name
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expected_path = os.path.join(scan_dir.images_dir, SCAN_DATA_FILENAME)
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# Asking the scan manager for the path will return None as there is no file.
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assert scan_dir_manager.get_scan_data_path(scan_name) is None
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# Asking the scan directly will return the location the file should be located
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# this is so it can be created.
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assert scan_dir.scan_data_path == expected_path
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# Remove the images directory.
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shutil.rmtree(scan_dir.images_dir)
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assert scan_dir_manager.get_scan_data_path(scan_name) is None
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def test_get_scan_data_dict():
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"""Check that the dictionary for the scan data is returned, or None if doesn't exist."""
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_clear_scan_dir()
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scan_dir_manager = ScanDirectoryManager(BASE_SCAN_DIR)
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scan_dir = scan_dir_manager.new_scan_dir("fake_scan")
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scan_name = scan_dir.name
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# Doesn't yet exist
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assert scan_dir_manager.get_scan_data_dict(scan_name) is None
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fake_data = {"foo": 1, "bar": "foobar"}
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with open(scan_dir.scan_data_path, "w", encoding="utf-8") as json_file:
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json.dump(fake_data, json_file)
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# Should now be able to load this fake data from disk
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assert scan_dir_manager.get_scan_data_dict(scan_name) == fake_data
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# Check None is returned if the data cannot be read.
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with open(scan_dir.scan_data_path, "w", encoding="utf-8") as json_file:
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json_file.write("this is not json")
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assert scan_dir_manager.get_scan_data_dict(scan_name) is None
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def test_empty_scan_info():
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"""Test the scan info is correct even if the scan is empty."""
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_clear_scan_dir()
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@ -339,6 +382,42 @@ def test_zipping_scan_data():
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assert not file.endswith(".dzi")
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def test_saving_and_loading_scan_data():
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"""Test that scan data is saved and loaded as expected."""
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_clear_scan_dir()
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scan_dir_manager = ScanDirectoryManager(BASE_SCAN_DIR)
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scan_dir = scan_dir_manager.new_scan_dir("fake_scan")
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scan_name = scan_dir.name
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# Should start without a scan data file.
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assert not os.path.isfile(scan_dir.scan_data_path)
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# Create
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scan_data_obj = _fake_scan_data()
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scan_dir.save_scan_data(scan_data_obj)
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# File should now exist
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assert os.path.isfile(scan_dir.scan_data_path)
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# Dump the scan json to a string an reload it
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# Note that more detailed checking of the dumping and loading of ScanData is in
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# tests/test_scan_data.py
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scan_data_dict = json.loads(scan_data_obj.model_dump_json())
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# What is loaded from file should be the same as from dumping and loading.
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assert scan_dir_manager.get_scan_data_dict(scan_name) == scan_data_dict
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def test_saving_scan_data_error():
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"""Test that saving scan data if there is no images directory raises FileNotFoundError."""
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_clear_scan_dir()
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scan_dir_manager = ScanDirectoryManager(BASE_SCAN_DIR)
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scan_dir = scan_dir_manager.new_scan_dir("fake_scan")
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# Remove the images directory.
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shutil.rmtree(scan_dir.images_dir)
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# Should raise FileNotFoundError.
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with pytest.raises(FileNotFoundError):
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scan_dir.save_scan_data(_fake_scan_data())
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def test_all_files():
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"""Test all_files returns the path, and respects skipped directories."""
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_clear_scan_dir()
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