rahix/openflexure-microscope-server
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions

Fix tests

Browse source
This commit is contained in:
Julian Stirling 2026-03-24 16:31:04 +00:00
parent b8db7ae2a1
commit 5303664a4e
1 changed files with 12 additions and 4 deletions
Download patch file Download diff file Expand all files Collapse all files

16
tests/unit_tests/test_stack.py
View file

@ -270,7 +270,9 @@ def test_create_stack(histo_scan_workflow, caplog):
initial_min_images_to_test = histo_scan_workflow.stack_min_images_to_test initial_min_images_to_test = histo_scan_workflow.stack_min_images_to_test
initial_images_to_save = histo_scan_workflow.stack_images_to_save initial_images_to_save = histo_scan_workflow.stack_images_to_save
with caplog.at_level(logging.INFO): with caplog.at_level(logging.INFO):
stack_params = histo_scan_workflow.create_smart_stack_params() stack_params = histo_scan_workflow.create_smart_stack_params(
save_on_failure=not histo_scan_workflow.skip_background
)
assert len(caplog.records) == 0 assert len(caplog.records) == 0
assert histo_scan_workflow.stack_min_images_to_test == initial_min_images_to_test assert histo_scan_workflow.stack_min_images_to_test == initial_min_images_to_test
@ -294,7 +296,9 @@ def test_coercing_stack_test_ims(
histo_scan_workflow.stack_min_images_to_test = initial_test_ims histo_scan_workflow.stack_min_images_to_test = initial_test_ims
with caplog.at_level(logging.WARNING): with caplog.at_level(logging.WARNING):
stack_params = histo_scan_workflow.create_smart_stack_params() stack_params = histo_scan_workflow.create_smart_stack_params(
save_on_failure=not histo_scan_workflow.skip_background
)
assert len(caplog.records) == 1 assert len(caplog.records) == 1
assert str(caplog.records[0].msg).startswith(expected_log_start) assert str(caplog.records[0].msg).startswith(expected_log_start)
@ -322,7 +326,9 @@ def test_coercing_stack_save_ims(
histo_scan_workflow.stack_images_to_save = initial_save_ims histo_scan_workflow.stack_images_to_save = initial_save_ims
with caplog.at_level(logging.WARNING): with caplog.at_level(logging.WARNING):
stack_params = histo_scan_workflow.create_smart_stack_params() stack_params = histo_scan_workflow.create_smart_stack_params(
save_on_failure=not histo_scan_workflow.skip_background
)
assert len(caplog.records) == 1 assert len(caplog.records) == 1
assert str(caplog.records[0].msg).startswith(expected_log_start) assert str(caplog.records[0].msg).startswith(expected_log_start)
@ -397,7 +403,9 @@ def setup_and_run_smart_z_stack(
is a list, it will be set as a side effect (and should be a list of tuples of is a list, it will be set as a side effect (and should be a list of tuples of
results). If it a tuple (or anything else), it is set as a return value. results). If it a tuple (or anything else), it is set as a return value.
""" """
stack_params = histo_scan_workflow.create_smart_stack_params() stack_params = histo_scan_workflow.create_smart_stack_params(
save_on_failure=not histo_scan_workflow.skip_background
)
stack_params.settling_time = 0 # Don't settle or tests take forever. stack_params.settling_time = 0 # Don't settle or tests take forever.
autofocus_thing.capture_stack_image = mocker.Mock() autofocus_thing.capture_stack_image = mocker.Mock()