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More descriptive variable names in smart_scan, use resize in stitching with no default

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jaknapper 2025-05-20 14:41:08 +01:00 • committed by Julian Stirling
parent 7052917ff9
commit 4271c28045
1 changed files with 5 additions and 4 deletions
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9
src/openflexure_microscope_server/things/smart_scan.py
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@ -59,11 +59,11 @@ def ensure_free_disk_space(path: str, min_space: int = 500000000) -> None:
Raises: Raises:
NotEnoughFreeSpaceError if the remaining storage is below min_space NotEnoughFreeSpaceError if the remaining storage is below min_space
""" """
du = shutil.disk_usage(path) disk_usage = shutil.disk_usage(path)
if du.free < min_space: if disk_usage.free < min_space:
raise NotEnoughFreeSpaceError( raise NotEnoughFreeSpaceError(
"There is not enough free disk space to continue. " "There is not enough free disk space to continue. "
f"(Required: {min_space >> 20}MB, free: {du.free >> 20}MB)." f"(Required: {min_space >> 20}MB, free: {disk_usage.free >> 20}MB)."
) )
@ -716,6 +716,7 @@ class SmartScanThing(Thing):
self.stitch_scan( self.stitch_scan(
logger=self._scan_logger, logger=self._scan_logger,
scan_name=self._ongoing_scan_name, scan_name=self._ongoing_scan_name,
stitch_resize=self._scan_data["stitch_resize"],
overlap=self._scan_data["overlap"], overlap=self._scan_data["overlap"],
) )
self.promote_stitch_files(self._scan_logger) self.promote_stitch_files(self._scan_logger)
@ -1079,8 +1080,8 @@ class SmartScanThing(Thing):
self, self,
logger: InvocationLogger, logger: InvocationLogger,
scan_name: str, scan_name: str,
stitch_resize: float,
overlap: float = 0.0, overlap: float = 0.0,
stitch_resize: float = 0.25,
) -> None: ) -> None:
"""Generate a stitched image based on stage position metadata """Generate a stitched image based on stage position metadata