rahix/openflexure-microscope-server
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Chish36 2025-09-29 10:19:45 +01:00 • committed by Julian Stirling
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README.md
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@ -112,12 +112,11 @@ To start the simulation server:
* Activate the virtual environment that was set up during installation * Activate the virtual environment that was set up during installation
* Run the following command: * Run the following command:
`openflexure-microscope-server --fallback -c ./ofm_config_simulation.json` `openflexure-microscope-server --fallback -c ./ofm_config_simulation.json`
* Open the address displayed in the terminal in any browser. * Open the address displayed in the terminal in any browser.
* To close the simulation server, return to the terminal and press `ctrl + c`. * To close the simulation server, return to the terminal and press `ctrl + c`.
> Note: If you are using Windows, we advise running this command in PowerShell. If it doesn't work this, might be a permission issue on managed machines, in which case try executing the command in a CMD terminal. > Note: If you are using Windows, we advise running this command in PowerShell. If it doesn't work this, might be a permission issue on managed machines, in which case try executing the command in a CMD terminal.
> Note: If you receive an error saying that port 5000 is already in use, you can specify a different port to run the simulation on using `--port`: > Note: If you receive an error saying that port 5000 is already in use, you can specify a different port to run the simulation on using `--port`:

3
simulation_guide.md
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@ -5,11 +5,12 @@ This guide walks you through running the simulation server for the OpenFlexure M
The simulation server GUI is a copy of the GUI you would find on the hardware with a simulated sample you can explore. Most functionality included in the hardware operates on the simulation server. This includes: The simulation server GUI is a copy of the GUI you would find on the hardware with a simulated sample you can explore. Most functionality included in the hardware operates on the simulation server. This includes:
* Camera stage mapping and 'click to move' * Camera stage mapping and 'click to move'
* Scanning and stitching * Scanning and stitching*
* Autofocus * Autofocus
* Image capture * Image capture
* Stage navigation * Stage navigation
**Please note: the final stitch at the end of a scan currently doesn't work on Windows.*
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