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Co-authored-by: Joe Knapper <joe.knapper@glasgow.ac.uk>
This commit is contained in:
Julian Stirling 2025-11-12 19:11:14 +00:00
parent 23f87869ac
commit 38b8c5baa5
2 changed files with 9 additions and 8 deletions
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5
src/openflexure_microscope_server/things/autofocus.py
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@ -812,7 +812,7 @@ class AutofocusThing(lt.Thing):
return "restart", capture_id
return "continue", capture_id
# Fint the peak
# Fit the peak
x = range(n_imgs)
coeffs, cov = np.polyfit(x, sharpnesses, deg=2, cov=True)
a = float(coeffs[0])
@ -833,7 +833,8 @@ class AutofocusThing(lt.Thing):
# the stack ie for a stack of 7 images, best image must be between 3rd and 5th
edge_size = 2
# Check both the peak from fitting and the sharpest image are not the
# Check both the peak from fitting and the sharpest image are not at the
# edge of the stack.
if turning < edge_size - 0.5 or sharpest_index < edge_size:
return "restart", capture_id
if turning > n_imgs - (edge_size - 0.5) or sharpest_index >= n_imgs - edge_size: