Merge branch 'objective-sim' into 'v3'
Scale blur in simulator based on objective Closes #745 See merge request openflexure/openflexure-microscope-server!567
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1 changed files with 5 additions and 3 deletions
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@ -383,9 +383,11 @@ class SimulatedCamera(BaseCamera):
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# Use npx to make each 1d index list 3D
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focused_np_img = canvas[np.ix_(x_indices, y_indices, z_indices)]
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np_img = fast_resize_and_blur(
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focused_np_img, sigma=np.abs(im_pos[2]) / 5, shape=self.shape
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)
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# Scale blurring based on objective
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sigma = np.abs(im_pos[2]) * (self.objective / 20) ** 2 / 5
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np_img = fast_resize_and_blur(focused_np_img, sigma=sigma, shape=self.shape)
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# Generate random noise by repeating 500 noise points, as the speed rather
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# than randomness is important for simulation.
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noise = RNG.normal(scale=self.noise_level, size=500).astype("int16")
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