From 2ba9c9493bbed4f30fc9cc13a5d1904ca900589c Mon Sep 17 00:00:00 2001
From: Richard Bowman <richard.bowman@cantab.net>
Date: Wed, 25 Mar 2020 05:24:10 +0000
Subject: [PATCH] Added a pane for camera/stage calibration

---
 .../controlComponents/paneSettings.vue        |   7 ++
 .../settingsComponents/cameraSettings.vue     |   2 +-
 .../cameraStageMappingSettings.vue            | 111 ++++++++++++++++++
 3 files changed, 119 insertions(+), 1 deletion(-)
 create mode 100644 src/components/controlComponents/settingsComponents/cameraStageMappingSettings.vue

diff --git a/src/components/controlComponents/paneSettings.vue b/src/components/controlComponents/paneSettings.vue
index ca8fd408..24e1a1a0 100644
--- a/src/components/controlComponents/paneSettings.vue
+++ b/src/components/controlComponents/paneSettings.vue
@@ -13,6 +13,11 @@
         <div class="uk-accordion-content"><cameraSettings /></div>
       </li>
 
+      <li v-if="$store.getters.ready">
+        <a class="uk-accordion-title" href="#">Camera/stage mapping settings</a>
+        <div class="uk-accordion-content"><cameraStageMappingSettings /></div>
+      </li>
+
       <li v-if="$store.getters.ready">
         <a class="uk-accordion-title" href="#">Microscope settings</a>
         <div class="uk-accordion-content"><microscopeSettings /></div>
@@ -25,6 +30,7 @@
 import streamSettings from "./settingsComponents/streamSettings.vue";
 import microscopeSettings from "./settingsComponents/microscopeSettings.vue";
 import cameraSettings from "./settingsComponents/cameraSettings.vue";
+import cameraStageMappingSettings from "./settingsComponents/cameraStageMappingSettings.vue";
 import appSettings from "./settingsComponents/appSettings.vue";
 
 // Export main app
@@ -34,6 +40,7 @@ export default {
   components: {
     streamSettings,
     cameraSettings,
+    cameraStageMappingSettings,
     microscopeSettings,
     appSettings
   }
diff --git a/src/components/controlComponents/settingsComponents/cameraSettings.vue b/src/components/controlComponents/settingsComponents/cameraSettings.vue
index caf62c7a..80bd4a45 100644
--- a/src/components/controlComponents/settingsComponents/cameraSettings.vue
+++ b/src/components/controlComponents/settingsComponents/cameraSettings.vue
@@ -103,7 +103,7 @@ export default {
   data: function() {
     return {
       settings: null,
-      recalibrationLinks: null,
+      recalibrationLinks: {},
       isCalibrating: false
     };
   },
diff --git a/src/components/controlComponents/settingsComponents/cameraStageMappingSettings.vue b/src/components/controlComponents/settingsComponents/cameraStageMappingSettings.vue
new file mode 100644
index 00000000..84ee70eb
--- /dev/null
+++ b/src/components/controlComponents/settingsComponents/cameraStageMappingSettings.vue
@@ -0,0 +1,111 @@
+<template>
+  <div id="cameraStageMappingSettings">
+    <form @submit.prevent="applyConfigRequest">
+     
+
+      <!--Show auto calibrate if default plugin is enabled-->
+      <div v-if="'calibrate_xy' in recalibrationLinks" class="uk-margin-small">
+        <taskSubmitter
+          :can-terminate="false"
+          :requires-confirmation="true"
+          :confirmation-message="
+            'Start recalibration of the stage to the camera? This may take a while, and the microscope will be locked during this time.'
+          "
+          :submit-url="recalibrationLinks.calibrate_xy.href"
+          :submit-label="'Auto-Calibrate using camera'"
+          @response="onRecalibrateResponse"
+          @error="onRecalibrateError"
+        >
+        </taskSubmitter>
+      </div>
+    </form>
+  </div>
+</template>
+
+<script>
+import axios from "axios";
+import taskSubmitter from "../../genericComponents/taskSubmitter";
+
+// Export main app
+export default {
+  name: "CameraStageMappingSettings",
+
+  components: {
+    taskSubmitter
+  },
+
+  data: function() {
+    return {
+      settings: null,
+      recalibrationLinks: {},
+      isCalibrating: false
+    };
+  },
+
+  computed: {
+    settingsUri: function() {
+      return `${this.$store.getters.baseUri}/api/v2/instrument/settings`;
+    },
+    pluginsUri: function() {
+      return `${this.$store.getters.baseUri}/api/v2/extensions`;
+    }
+  },
+
+  mounted() {
+    this.updateSettings();
+    this.updateRecalibrationLinks();
+  },
+
+  methods: {
+    updateSettings: function() {
+      axios
+        .get(this.settingsUri)
+        .then(response => {
+          this.settings = response.data.extensions['org.openflexure.camera_stage_mapping'];
+        })
+        .catch(error => {
+          this.modalError(error); // Let mixin handle error
+          this.settings = {};
+        });
+    },
+
+    updateRecalibrationLinks: function() {
+      axios
+        .get(this.pluginsUri) // Get a list of plugins
+        .then(response => {
+          var plugins = response.data;
+          var foundExtension = plugins.find(
+            e => e.title === "org.openflexure.camera_stage_mapping"
+          );
+          // if camera-stage mapping extension is enabled
+          if (foundExtension) {
+            // Get plugin action link
+            this.recalibrationLinks = foundExtension.links;
+          } else {
+            this.recalibrationLinks = {}
+          }
+        })
+        .catch(error => {
+          this.modalError(error); // Let mixin handle error
+        });
+    },
+
+    onRecalibrateResponse: function() {
+      this.modalNotify("Finished stage-to-camera calibration.");
+      // Update local settings
+      this.updateSettings();
+    },
+
+    onRecalibrateError: function(error) {
+      this.modalError(error); // Let mixin handle error
+    }
+  }
+};
+</script>
+
+<style lang="less">
+.center-spinner {
+  margin-left: auto;
+  margin-right: auto;
+}
+</style>