Removed async metadata. Added metadata cache.
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parent
0101a5b91e
commit
1cba4205a6
1 changed files with 50 additions and 25 deletions
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@ -6,6 +6,7 @@ import logging
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import pkg_resources
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import uuid
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from typing import Tuple
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from expiringdict import ExpiringDict
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import gevent
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@ -61,6 +62,10 @@ class Microscope:
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# Apply settings loaded from file
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self.update_settings(self.settings_file.load())
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# Data cache
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self.configuration_cache = ExpiringDict(max_len=100, max_age_seconds=3600)
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self.metadata_cache = ExpiringDict(max_len=100, max_age_seconds=3600)
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def __enter__(self):
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"""Create microscope on context enter."""
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return self
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@ -252,8 +257,7 @@ class Microscope:
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# Save config to file
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self.settings_file.save(current_config, backup=True)
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@property
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def configuration(self):
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def force_get_configuration(self):
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with self.lock:
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initial_configuration = self.configuration_file.load()
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@ -277,17 +281,28 @@ class Microscope:
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initial_configuration.update(current_configuration)
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return initial_configuration
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def get_configuration(self, cache_key=None):
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if cache_key:
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cached_config = self.configuration_cache.get(cache_key, None)
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if cached_config:
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return cached_config
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else:
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full_config = self.force_get_configuration()
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self.configuration_cache[cache_key] = full_config
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return full_config
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return self.force_get_configuration()
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@property
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def metadata(self):
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def configuration(self):
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return self.get_configuration()
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def force_get_metadata(self):
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"""
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Microscope system metadata, to be applied to basically all captures
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"""
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with Timer("Reading settings:"):
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settings = self.read_settings(full=False)
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with Timer("Reading state:"):
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state = self.state
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with Timer("Reading configuration:"):
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configuration = self.configuration
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settings = self.read_settings(full=False)
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state = self.state
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configuration = self.configuration
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system_metadata = {
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"id": self.id,
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"settings": settings,
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@ -297,17 +312,23 @@ class Microscope:
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return system_metadata
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def add_metadata_to_capture(self, output, metadata, annotations, tags):
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logging.debug(f"Waiting for {output.file}")
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# Wait for the file to be written to disk
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with Timer("Waiting for file:"):
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output.file_ready.wait()
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with Timer("Building metadata"):
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full_metadata = {"instrument": self.metadata, **metadata}
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with Timer("Writing metadata to file"):
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output.put_and_save(tags, annotations, full_metadata)
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logging.info(f"Finished injecting EXIF data into {output.file}")
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def get_metadata(self, cache_key=None):
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logging.debug(f"Looking for cache key {cache_key}")
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if cache_key:
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cached_metadata = self.metadata_cache.get(cache_key, None)
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if cached_metadata:
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logging.debug(f"Reusing cached microscope metadata: {cache_key}")
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return cached_metadata
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else:
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full_metadata = self.force_get_metadata()
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self.metadata_cache[cache_key] = full_metadata
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return full_metadata
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logging.debug("Generating full microscope metadata")
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return self.force_get_metadata()
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@property
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def metadata(self):
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return self.get_metadata()
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def capture(
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self,
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@ -321,6 +342,7 @@ class Microscope:
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annotations: dict = None,
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tags: list = None,
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metadata: dict = None,
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cache_key: str = None
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):
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logging.debug(f"Microscope capturing to {filename}")
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if not annotations:
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@ -337,7 +359,7 @@ class Microscope:
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)
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# Capture to output object
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logging.info("Starting microscope capture...")
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logging.info(f"Starting microscope capture {filename}")
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self.camera.capture(
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output,
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use_video_port=use_video_port,
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@ -347,10 +369,13 @@ class Microscope:
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)
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# Gether metadata from hardware in a greenlet
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#gevent.get_hub().threadpool.spawn(self.add_metadata_to_capture, output, metadata, annotations, tags)
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gevent.spawn(self.add_metadata_to_capture, output, metadata, annotations, tags)
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#self.add_metadata_to_capture(output, metadata, annotations, tags)
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logging.debug(f"Waiting for {output.file}")
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# Wait for the file to be written to disk
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output.file_ready.wait()
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full_metadata = {"instrument": self.get_metadata(cache_key), **metadata}
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output.put_and_save(tags, annotations, full_metadata)
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logging.debug(f"Finished adding EXIF data to {output.file}")
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logging.info(f"Finished capture to {output.file}")
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logging.debug(f"Finished capture to {output.file}")
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return output
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