Moved example extension and switched to includes
This commit is contained in:
parent
d2780f5541
commit
1115d00a18
12 changed files with 117 additions and 397 deletions
146
docs/source/extensions/example_extension/07_ev_gui.py
Normal file
146
docs/source/extensions/example_extension/07_ev_gui.py
Normal file
|
|
@ -0,0 +1,146 @@
|
|||
from labthings.server.extensions import BaseExtension
|
||||
from labthings.server.find import find_component
|
||||
from labthings.server.view import View
|
||||
|
||||
from labthings.server.decorators import (
|
||||
use_args,
|
||||
marshal_with,
|
||||
ThingProperty,
|
||||
PropertySchema,
|
||||
ThingAction,
|
||||
doc_response,
|
||||
marshal_task,
|
||||
)
|
||||
from labthings.server.schema import Schema
|
||||
from labthings.server import fields
|
||||
|
||||
from flask import send_file # Used to send images from our server
|
||||
import io # Used in our capture action
|
||||
import time # Used in our timelapse function
|
||||
|
||||
# Used in our timelapse function
|
||||
from openflexure_microscope.camera.base import generate_basename
|
||||
|
||||
# Used to run our timelapse in a background thread
|
||||
from labthings.core.tasks import taskify, update_task_progress
|
||||
|
||||
# Used to convert our GUI dictionary into a complete eV extension GUI
|
||||
from openflexure_microscope.api.utilities.gui import build_gui
|
||||
|
||||
## Extension methods
|
||||
|
||||
|
||||
def timelapse(microscope, n_images, t_between):
|
||||
"""
|
||||
Save a set of images in a timelapse
|
||||
|
||||
Args:
|
||||
microscope: Microscope object
|
||||
n_images (int): Number of images to take
|
||||
t_between (int/float): Time, in seconds, between sequential captures
|
||||
"""
|
||||
base_file_name = generate_basename()
|
||||
folder = "TIMELAPSE_{}".format(base_file_name)
|
||||
|
||||
# Take exclusive control over both the camera and stage
|
||||
with microscope.camera.lock, microscope.stage.lock:
|
||||
for n in range(n_images):
|
||||
# Generate a filename
|
||||
filename = f"{base_file_name}_image{n}"
|
||||
# Create a file to save the image to
|
||||
output = microscope.camera.new_image(
|
||||
filename=filename, folder=folder, temporary=False
|
||||
)
|
||||
|
||||
# Capture
|
||||
microscope.camera.capture(output)
|
||||
|
||||
# Add system metadata
|
||||
output.put_metadata(microscope.metadata, system=True)
|
||||
|
||||
# Update task progress (only does anyting if the function is running in a LabThings task)
|
||||
progress_pct = ((n + 1) / n_images) * 100 # Progress, in percent
|
||||
update_task_progress(progress_pct)
|
||||
|
||||
# Wait for the specified time
|
||||
time.sleep(t_between)
|
||||
|
||||
|
||||
## Extension views
|
||||
|
||||
|
||||
@ThingAction
|
||||
class TimelapseAPI(View):
|
||||
"""
|
||||
Take a series of images in a timelapse, running as a background task
|
||||
"""
|
||||
|
||||
@marshal_task # Shorthand for marshaling with a pre-made Task object schema
|
||||
@use_args(
|
||||
{
|
||||
"n_images": fields.Integer(
|
||||
required=True, example=5, description="Number of images"
|
||||
),
|
||||
"t_between": fields.Number(
|
||||
missing=1, example=1, description="Time (seconds) between images"
|
||||
),
|
||||
}
|
||||
)
|
||||
def post(self, args):
|
||||
# Find our microscope component
|
||||
microscope = find_component("org.openflexure.microscope")
|
||||
|
||||
# Create and start "timelapse", running in a background task
|
||||
task = taskify(timelapse)(
|
||||
microscope, args.get("n_images"), args.get("t_between")
|
||||
)
|
||||
|
||||
return task
|
||||
|
||||
|
||||
## Extension GUI (OpenFlexure eV)
|
||||
# Alternate form without any dynamic parts
|
||||
extension_gui = {
|
||||
"icon": "timelapse", # Name of an icon from https://material.io/resources/icons/
|
||||
"forms": [ # List of forms. Each form is a collapsible accordion panel
|
||||
{
|
||||
"name": "Start a timelapse", # Form title
|
||||
"isCollapsible": False, # This form cannot be collapsed into an accordion
|
||||
"isTask": True, # This forms submission starts a background task
|
||||
"route": "/timelapse", # The URL rule (as given by "add_view") of your submission view
|
||||
"submitLabel": "Start", # Label for the form submit button
|
||||
"schema": [ # List of dictionaries. Each element is a form component.
|
||||
{
|
||||
"fieldType": "numberInput",
|
||||
"name": "n_images", # Name of the view arg this value corresponds to
|
||||
"label": "Number of images",
|
||||
"min": 1, # HTML number input attribute
|
||||
"default": 5, # HTML number input attribute
|
||||
},
|
||||
{
|
||||
"fieldType": "numberInput",
|
||||
"name": "t_between",
|
||||
"label": "Time (seconds) between images",
|
||||
"min": 0.1, # HTML number input attribute
|
||||
"step": 0.1, # HTML number input attribute
|
||||
"default": 1, # HTML number input attribute
|
||||
},
|
||||
],
|
||||
}
|
||||
],
|
||||
}
|
||||
|
||||
|
||||
## Create extension
|
||||
|
||||
# Create your extension object
|
||||
my_extension = BaseExtension("com.myname.timelapse-extension", version="0.0.0")
|
||||
|
||||
# Add methods to your extension
|
||||
my_extension.add_method(timelapse, "timelapse")
|
||||
|
||||
# Add API views to your extension
|
||||
my_extension.add_view(TimelapseAPI, "/timelapse")
|
||||
|
||||
# Add OpenFlexure eV GUI to your extension
|
||||
my_extension.add_meta("gui", build_gui(extension_gui, my_extension))
|
||||
Loading…
Add table
Add a link
Reference in a new issue