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Update depedencies and changelog priort to v3.0.0-alpha1 release

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Closes #398
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Julian Stirling 2025-06-09 15:39:26 +01:00
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CHANGELOG.md
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# [v3.0.0-beta1](https://gitlab.com/openflexure/openflexure-microscope-server/compare/v2.11.0...v3.0.0-alpha1)
This is the first alpha release of a almost total overhaul of the server, and the underlying LabThings framework. Some highlights are:
* Moved to underlying architecture based on labthings-fastapi. This allows each component of the microscope to be a "Thing", which can interact with each other.
* Current "Things" are camera, stage, autofocus, smart_scan background_detect, auto_recentre_stage, capture, settings_manager, system_control and test
* Overhaul of scanning, removing the predetermined, rectangular area in favour of exploring the sample indefinitely by appending neighbouring xy sites after each capture
* Background detect Thing optionally uses the colour distribution of a user-set "background" image to determine if the field of view is sample or background, and plan future scanning accordingly
* Stitching from openflexure-stitching now part of the scanning protocol, displaying a live updating preview of the current scan, and optionally producing a high res stitched JPEG, DZI and/or TIFF at the end of the scan
* A DZI viewer in the scan tab, allowing stitched images to be opened from within the GUI
* Webapp updates - scan tab added showing thumbnail preview + image count + scan times, gallery removed, tour removed, power tab added,
* Updated to numpy 2
* Automatically delete empty scans
# [v2.11.0](https://gitlab.com/openflexure/openflexure-microscope-server/compare/v2.10.1...v2.11.0) (2022-08-08)
## New features
* Background detection can now be used in scans, if you have the background-detect extension. ([!153](https://gitlab.com/openflexure/openflexure-microscope-server/-/merge_requests/153))